Variant report

Variant	rs11187802
Chromosome Location	chr10:95938864-95938865
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10882400	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882401	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11187803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11187808	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4300334	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6583927	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7913115	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95924800-95947200	Weak transcription	Aorta	Aorta
2	chr10:95929000-95954200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:95929200-95966800	Weak transcription	Pancreas	Pancrea
4	chr10:95931600-95953000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:95931800-95952600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:95932000-95940600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr10:95932000-95944200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr10:95932000-95948800	Weak transcription	Gastric	stomach
9	chr10:95932000-95953000	Weak transcription	Colonic Mucosa	Colon
10	chr10:95932400-95939000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr10:95932600-95968000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr10:95932800-95940600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr10:95932800-95954200	Weak transcription	Fetal Brain Female	brain
14	chr10:95933000-95953000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr10:95933000-95954200	Weak transcription	Right Atrium	heart
16	chr10:95933000-95972600	Weak transcription	Fetal Intestine Large	intestine
17	chr10:95935200-95942400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:95936200-95943200	Weak transcription	Fetal Intestine Small	intestine
19	chr10:95936600-95939000	Enhancers	Fetal Stomach	stomach
20	chr10:95936600-95939200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:95936800-95942600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr10:95937400-95940600	Enhancers	Fetal Lung	lung
23	chr10:95937600-95939200	Enhancers	Ovary	ovary
24	chr10:95937800-95939600	Enhancers	Fetal Muscle Leg	muscle
25	chr10:95938000-95939200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr10:95938000-95939200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr10:95938000-95939200	Enhancers	Left Ventricle	heart
28	chr10:95938000-95939400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr10:95938400-95940400	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr10:95938600-95939000	Enhancers	NHLF	lung
31	chr10:95938600-95939200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr10:95938600-95942600	Weak transcription	A549	lung

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