Variant report

Variant	rs11187808
Chromosome Location	chr10:95949432-95949433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10882400	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882401	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11187802	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11187803	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17109833	0.86[YRI][hapmap]
rs17109851	0.86[YRI][hapmap]
rs4300334	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6583927	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7082818	0.85[CHB][hapmap]
rs7913115	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11187808	PPP1R3C	cis	parietal	SCAN
rs11187808	C10orf12	cis	cerebellum	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95929000-95954200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:95929200-95966800	Weak transcription	Pancreas	Pancrea
3	chr10:95931600-95953000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:95931800-95952600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:95932000-95953000	Weak transcription	Colonic Mucosa	Colon
6	chr10:95932600-95968000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:95932800-95954200	Weak transcription	Fetal Brain Female	brain
8	chr10:95933000-95953000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:95933000-95954200	Weak transcription	Right Atrium	heart
10	chr10:95933000-95972600	Weak transcription	Fetal Intestine Large	intestine
11	chr10:95939200-95952800	Weak transcription	Ovary	ovary
12	chr10:95940600-95952800	Weak transcription	Fetal Lung	lung
13	chr10:95941200-95979800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr10:95943400-95973800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr10:95943800-95952800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr10:95944000-95952600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:95944000-95952600	Weak transcription	A549	lung
18	chr10:95944000-95952600	Weak transcription	NH-A	brain
19	chr10:95944200-95959800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr10:95944400-95952600	Weak transcription	Fetal Muscle Leg	muscle
21	chr10:95945000-95952800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:95945200-95951200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:95947400-95952800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr10:95947600-95952400	Weak transcription	Aorta	Aorta
25	chr10:95948400-95952800	Weak transcription	Fetal Stomach	stomach
26	chr10:95948600-95954000	Weak transcription	Fetal Intestine Small	intestine

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