Variant report

Variant	rs11188036
Chromosome Location	chr10:96348254-96348255
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10882475	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188020	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1409655	0.91[AMR][1000 genomes]
rs1977288	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1977291	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2031323	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2860840	0.90[AMR][1000 genomes]
rs4414147	0.88[AMR][1000 genomes]
rs4564258	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4600139	0.90[AMR][1000 genomes]
rs6583942	0.80[EUR][1000 genomes]
rs6583947	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7075182	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7078478	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7087798	0.83[EUR][1000 genomes]
rs7092129	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7096007	0.84[EUR][1000 genomes]
rs7900007	0.80[EUR][1000 genomes]
rs7922956	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9645542	0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1053747	chr10:96211618-96366396	Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv517681	chr10:96343228-96387079	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96306400-96357200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr10:96306400-96365600	Weak transcription	Esophagus	oesophagus
3	chr10:96306400-96370400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:96306400-96370600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:96306400-96371000	Weak transcription	Ovary	ovary
6	chr10:96306600-96349800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr10:96306600-96353800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr10:96306600-96379200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:96306800-96348400	Weak transcription	Primary B cells from cord blood	blood
10	chr10:96306800-96349800	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr10:96306800-96357200	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr10:96306800-96373000	Weak transcription	Primary T cells from cord blood	blood
13	chr10:96307000-96358200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:96307000-96375000	Weak transcription	Osteobl	bone
15	chr10:96307200-96371200	Weak transcription	Fetal Brain Male	brain
16	chr10:96307600-96356000	Weak transcription	NHDF-Ad	bronchial
17	chr10:96307600-96373200	Weak transcription	Brain Germinal Matrix	brain
18	chr10:96307800-96373000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr10:96308000-96373200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:96309400-96354000	Weak transcription	K562	blood
21	chr10:96309600-96372800	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr10:96309600-96377000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr10:96312200-96354000	Weak transcription	Gastric	stomach
24	chr10:96312800-96372200	Strong transcription	Dnd41	blood
25	chr10:96314200-96373400	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr10:96315000-96369200	Weak transcription	Fetal Kidney	kidney
27	chr10:96316000-96371400	Weak transcription	Fetal Brain Female	brain
28	chr10:96316000-96374000	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr10:96316200-96357600	Weak transcription	Duodenum Mucosa	Duodenum
30	chr10:96316200-96373000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr10:96317000-96372600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
32	chr10:96321000-96353200	Weak transcription	Fetal Intestine Large	intestine
33	chr10:96324000-96356600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr10:96324000-96376600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr10:96324200-96353800	Weak transcription	Primary B cells from peripheral blood	blood
36	chr10:96324200-96365600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr10:96325800-96376000	Weak transcription	NHLF	lung
38	chr10:96331000-96377400	Weak transcription	Placenta	Placenta
39	chr10:96331200-96361800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr10:96332400-96359200	Weak transcription	Left Ventricle	heart
41	chr10:96332600-96350000	Weak transcription	Primary hematopoietic stem cells	blood
42	chr10:96333400-96352000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr10:96335400-96357200	Weak transcription	Small Intestine	intestine
44	chr10:96336600-96348800	Weak transcription	Fetal Muscle Leg	muscle
45	chr10:96337400-96350200	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr10:96338800-96354400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr10:96338800-96372000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr10:96339600-96353200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr10:96339600-96353600	Weak transcription	Fetal Intestine Small	intestine
50	chr10:96339800-96350400	Weak transcription	GM12878-XiMat	blood

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