Variant report

Variant	rs7922956
Chromosome Location	chr10:96318359-96318360
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96313810..96315629-chr10:96316079..96318695,2	K562	blood:

Variant related genes	Relation type
ENSG00000119969	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10882475	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11187930	0.80[EUR][1000 genomes]
rs11187940	0.81[EUR][1000 genomes]
rs11187960	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11188020	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11188036	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1334595	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1409655	0.85[AMR][1000 genomes]
rs1931757	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1977288	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1977291	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2031323	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2265366	0.81[EUR][1000 genomes]
rs2860840	0.84[AMR][1000 genomes]
rs4564258	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4600139	0.84[AMR][1000 genomes]
rs480032	0.81[EUR][1000 genomes]
rs6583941	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6583942	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6583947	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7075182	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7078478	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7087798	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7088008	0.90[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7092129	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7096007	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7900007	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9645542	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1053747	chr10:96211618-96366396	Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96306200-96318600	Weak transcription	Aorta	Aorta
2	chr10:96306400-96321200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:96306400-96325400	Weak transcription	Lung	lung
4	chr10:96306400-96330600	Weak transcription	Placenta	Placenta
5	chr10:96306400-96357200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:96306400-96365600	Weak transcription	Esophagus	oesophagus
7	chr10:96306400-96370400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:96306400-96370600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr10:96306400-96371000	Weak transcription	Ovary	ovary
10	chr10:96306600-96349800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:96306600-96353800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr10:96306600-96379200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:96306800-96318600	Weak transcription	HSMM	muscle
14	chr10:96306800-96323000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:96306800-96330400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr10:96306800-96348000	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr10:96306800-96348200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr10:96306800-96348400	Weak transcription	Primary B cells from cord blood	blood
19	chr10:96306800-96349800	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr10:96306800-96357200	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr10:96306800-96373000	Weak transcription	Primary T cells from cord blood	blood
22	chr10:96307000-96358200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:96307000-96375000	Weak transcription	Osteobl	bone
24	chr10:96307200-96318600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr10:96307200-96320000	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr10:96307200-96371200	Weak transcription	Fetal Brain Male	brain
27	chr10:96307600-96318800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr10:96307600-96325400	Weak transcription	NHLF	lung
29	chr10:96307600-96327800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:96307600-96356000	Weak transcription	NHDF-Ad	bronchial
31	chr10:96307600-96373200	Weak transcription	Brain Germinal Matrix	brain
32	chr10:96307800-96348200	Weak transcription	NHEK	skin
33	chr10:96307800-96373000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr10:96308000-96373200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:96309400-96340800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr10:96309400-96354000	Weak transcription	K562	blood
37	chr10:96309600-96372800	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr10:96309600-96377000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr10:96310200-96339800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr10:96310400-96339800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr10:96312200-96334400	Strong transcription	A549	lung
42	chr10:96312200-96354000	Weak transcription	Gastric	stomach
43	chr10:96312400-96319200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr10:96312400-96324800	Strong transcription	Hela-S3	cervix
45	chr10:96312800-96372200	Strong transcription	Dnd41	blood
46	chr10:96314000-96320600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr10:96314000-96330800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr10:96314200-96319200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr10:96314200-96339800	Strong transcription	Fetal Thymus	thymus
50	chr10:96314200-96373400	Strong transcription	HUES64 Cell Line	embryonic stem cell

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