Variant report

Variant	rs11187930
Chromosome Location	chr10:96168401-96168402
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:96162320..96165263-chr10:96165537..96170524,5	K562	blood:
2	chr10:96138954..96141946-chr10:96166423..96169292,2	MCF-7	breast:
3	chr10:96161032..96163641-chr10:96165276..96169974,4	MCF-7	breast:
4	chr10:96161925..96164221-chr10:96166006..96168495,5	MCF-7	breast:
5	chr10:96168251..96170600-chr10:96172199..96174103,2	K562	blood:

Variant related genes	Relation type
ENSG00000108239	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11187938	0.83[ASN][1000 genomes]
rs11187940	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11187960	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188020	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1334595	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1931757	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1977288	0.80[EUR][1000 genomes]
rs1977291	0.81[EUR][1000 genomes]
rs2265366	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2764378	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs480032	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6583941	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6583942	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7087798	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7088008	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7096007	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7393240	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7900007	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7922956	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	esv3398177	chr10:96139011-96169931	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	esv3411992	chr10:96139011-96172041	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	esv1801044	chr10:96162545-96170593	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	esv1815355	chr10:96162545-96189900	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
9	esv1817623	chr10:96162545-96189900	Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96163800-96184400	Weak transcription	Gastric	stomach
2	chr10:96164000-96171400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:96164200-96168800	Weak transcription	Small Intestine	intestine
4	chr10:96164200-96172800	Weak transcription	Colon Smooth Muscle	Colon
5	chr10:96164200-96173200	Weak transcription	Ovary	ovary
6	chr10:96164400-96168800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr10:96164600-96169000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr10:96164600-96169200	Weak transcription	Brain Germinal Matrix	brain
9	chr10:96164600-96171400	Weak transcription	Fetal Stomach	stomach
10	chr10:96164600-96172200	Weak transcription	Fetal Kidney	kidney
11	chr10:96164600-96180000	Weak transcription	Fetal Intestine Small	intestine
12	chr10:96164800-96171200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:96164800-96171400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:96164800-96172600	Weak transcription	Stomach Mucosa	stomach
15	chr10:96164800-96182400	Weak transcription	Lung	lung
16	chr10:96164800-96188200	Weak transcription	Right Atrium	heart
17	chr10:96165000-96168800	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr10:96165000-96169200	Weak transcription	Fetal Brain Male	brain
19	chr10:96165000-96170800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr10:96165000-96171200	Weak transcription	Placenta	Placenta
21	chr10:96165000-96172800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr10:96165200-96169000	Enhancers	Brain Hippocampus Middle	brain
23	chr10:96165400-96168600	Weak transcription	Fetal Lung	lung
24	chr10:96165400-96175800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr10:96165600-96168800	Weak transcription	NH-A	brain
26	chr10:96165600-96170200	Weak transcription	Liver	Liver
27	chr10:96165600-96172000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:96165600-96172000	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr10:96165600-96180600	Weak transcription	Left Ventricle	heart
30	chr10:96166000-96168800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:96166400-96168600	Enhancers	Brain Cingulate Gyrus	brain
32	chr10:96166400-96169400	Enhancers	Brain Angular Gyrus	brain
33	chr10:96166400-96172800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr10:96166400-96173200	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr10:96166600-96168600	Weak transcription	HSMM	muscle
36	chr10:96166600-96168800	Enhancers	Brain Anterior Caudate	brain
37	chr10:96166600-96171600	Enhancers	Brain Substantia Nigra	brain
38	chr10:96166800-96168800	Weak transcription	Adipose Nuclei	Adipose
39	chr10:96166800-96172400	Weak transcription	HSMMtube	muscle
40	chr10:96167600-96168800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr10:96167800-96168600	Active TSS	GM12878-XiMat	blood
42	chr10:96167800-96168800	Weak transcription	Pancreas	Pancrea
43	chr10:96167800-96171400	Weak transcription	Psoas Muscle	Psoas
44	chr10:96167800-96175800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr10:96168000-96168800	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr10:96168000-96171600	Weak transcription	NHDF-Ad	bronchial
47	chr10:96168200-96169000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr10:96168200-96170200	Weak transcription	HepG2	liver
49	chr10:96168400-96168800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr10:96168400-96168800	Weak transcription	Osteobl	bone

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