Variant report

Variant	rs11187938
Chromosome Location	chr10:96183351-96183352
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10786168	0.82[AFR][1000 genomes]
rs10882454	0.83[EUR][1000 genomes]
rs10882460	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10882463	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11187930	0.83[ASN][1000 genomes]
rs11187937	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11187939	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11187940	0.88[ASN][1000 genomes]
rs11187944	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11187952	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11187960	0.83[ASN][1000 genomes]
rs11187972	0.81[EUR][1000 genomes]
rs11187973	0.81[EUR][1000 genomes]
rs11187980	0.81[EUR][1000 genomes]
rs11188012	0.83[EUR][1000 genomes]
rs11527881	0.82[EUR][1000 genomes]
rs12221475	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12762574	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1749352	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1889485	0.81[EUR][1000 genomes]
rs1977289	0.82[EUR][1000 genomes]
rs1980741	0.81[EUR][1000 genomes]
rs2095380	0.81[EUR][1000 genomes]
rs2265364	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4351744	0.81[EUR][1000 genomes]
rs480032	0.86[ASN][1000 genomes]
rs4918333	0.81[EUR][1000 genomes]
rs517784	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs555782	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs556055	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6583941	0.82[ASN][1000 genomes]
rs692872	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7073639	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7078236	0.81[EUR][1000 genomes]
rs7089094	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7895305	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7913343	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7921721	0.81[EUR][1000 genomes]
rs9420641	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9633675	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9633699	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	esv1815355	chr10:96162545-96189900	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	esv1817623	chr10:96162545-96189900	Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96163800-96184400	Weak transcription	Gastric	stomach
2	chr10:96164800-96188200	Weak transcription	Right Atrium	heart
3	chr10:96169400-96183800	Weak transcription	HSMM	muscle
4	chr10:96171600-96188200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:96171800-96198200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:96173400-96183400	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:96173400-96188400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:96173600-96190200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr10:96178200-96184000	Weak transcription	Fetal Kidney	kidney
10	chr10:96180800-96184600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:96181400-96187800	Weak transcription	Brain Substantia Nigra	brain
12	chr10:96181800-96183800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr10:96182400-96184200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr10:96182600-96183600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:96182600-96184400	Enhancers	Osteobl	bone
16	chr10:96182800-96183400	Enhancers	Brain Cingulate Gyrus	brain
17	chr10:96182800-96183800	Enhancers	NH-A	brain
18	chr10:96182800-96186800	Weak transcription	Brain Hippocampus Middle	brain
19	chr10:96183000-96183600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:96183000-96184600	Enhancers	HSMMtube	muscle
21	chr10:96183000-96191600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:96183200-96184800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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