Variant report

Variant	rs480032
Chromosome Location	chr10:96171106-96171107
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96169823..96172016-chr10:96197395..96199700,2	MCF-7	breast:
2	chr10:96170708..96172443-chr10:96175266..96177548,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10786168	1.00[JPT][hapmap]
rs10786169	0.84[JPT][hapmap]
rs10882460	1.00[JPT][hapmap]
rs10882463	1.00[JPT][hapmap]
rs10882474	1.00[JPT][hapmap]
rs10882475	0.80[EUR][1000 genomes]
rs10882477	1.00[JPT][hapmap]
rs11187930	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11187938	0.86[ASN][1000 genomes]
rs11187939	1.00[JPT][hapmap]
rs11187940	0.95[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11187944	1.00[JPT][hapmap]
rs11187952	1.00[JPT][hapmap]
rs11187960	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11188009	1.00[JPT][hapmap]
rs11188012	0.84[JPT][hapmap]
rs11188019	0.83[JPT][hapmap]
rs11188020	0.95[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs12221475	1.00[JPT][hapmap]
rs1326839	0.94[JPT][hapmap]
rs1334595	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1931757	1.00[CEU][hapmap];0.83[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1977288	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs1977291	0.96[CEU][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1980741	0.84[JPT][hapmap]
rs2265365	0.82[AMR][1000 genomes]
rs2265366	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2281791	1.00[JPT][hapmap]
rs2764378	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3740358	1.00[JPT][hapmap]
rs3781262	1.00[JPT][hapmap]
rs4351744	0.83[JPT][hapmap]
rs4918402	1.00[JPT][hapmap]
rs517784	1.00[JPT][hapmap]
rs555782	0.83[ASN][1000 genomes]
rs556055	1.00[JPT][hapmap]
rs6583941	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6583942	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs692872	1.00[JPT][hapmap]
rs7078478	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs7078811	0.83[JPT][hapmap]
rs7083898	0.84[JPT][hapmap]
rs7087798	0.96[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7088008	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7092129	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs7096007	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7393240	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7900007	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7906843	0.82[JPT][hapmap]
rs7913343	1.00[JPT][hapmap]
rs7921721	0.83[JPT][hapmap]
rs7922956	0.81[EUR][1000 genomes]
rs9633675	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	esv3411992	chr10:96139011-96172041	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	esv1815355	chr10:96162545-96189900	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	esv1817623	chr10:96162545-96189900	Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96163800-96184400	Weak transcription	Gastric	stomach
2	chr10:96164000-96171400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:96164200-96172800	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:96164200-96173200	Weak transcription	Ovary	ovary
5	chr10:96164600-96171400	Weak transcription	Fetal Stomach	stomach
6	chr10:96164600-96172200	Weak transcription	Fetal Kidney	kidney
7	chr10:96164600-96180000	Weak transcription	Fetal Intestine Small	intestine
8	chr10:96164800-96171200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:96164800-96171400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:96164800-96172600	Weak transcription	Stomach Mucosa	stomach
11	chr10:96164800-96182400	Weak transcription	Lung	lung
12	chr10:96164800-96188200	Weak transcription	Right Atrium	heart
13	chr10:96165000-96171200	Weak transcription	Placenta	Placenta
14	chr10:96165000-96172800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr10:96165400-96175800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:96165600-96172000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:96165600-96172000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr10:96165600-96180600	Weak transcription	Left Ventricle	heart
19	chr10:96166400-96172800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr10:96166400-96173200	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr10:96166600-96171600	Enhancers	Brain Substantia Nigra	brain
22	chr10:96166800-96172400	Weak transcription	HSMMtube	muscle
23	chr10:96167800-96171400	Weak transcription	Psoas Muscle	Psoas
24	chr10:96167800-96175800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr10:96168000-96171600	Weak transcription	NHDF-Ad	bronchial
26	chr10:96169000-96171400	Weak transcription	Osteobl	bone
27	chr10:96169200-96172000	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr10:96169400-96171400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr10:96169400-96172000	Weak transcription	Adipose Nuclei	Adipose
30	chr10:96169400-96172600	Weak transcription	Brain Germinal Matrix	brain
31	chr10:96169400-96173000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr10:96169400-96173400	Enhancers	Brain Anterior Caudate	brain
33	chr10:96169400-96179200	Weak transcription	Pancreas	Pancrea
34	chr10:96169400-96183800	Weak transcription	HSMM	muscle
35	chr10:96169600-96172000	Weak transcription	NH-A	brain
36	chr10:96169800-96173400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr10:96170200-96171800	Enhancers	Liver	Liver
38	chr10:96170200-96172600	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr10:96170400-96175800	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr10:96170600-96171800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr10:96170800-96171200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr10:96170800-96171200	Weak transcription	Fetal Lung	lung
43	chr10:96171000-96171200	Enhancers	Brain Angular Gyrus	brain
44	chr10:96171000-96171600	Weak transcription	Brain Cingulate Gyrus	brain
45	chr10:96171000-96173800	Enhancers	Brain Hippocampus Middle	brain

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