Variant report

Variant	rs10786168
Chromosome Location	chr10:96305329-96305330
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF2	chr10:96304756-96305776	GM12878	blood:	n/a	n/a
2	IRF1	chr10:96305236-96305782	K562	blood:	n/a	chr10:96305455-96305467
3	YY1	chr10:96304986-96305370	GM12891	blood:	n/a	n/a
4	POLR2A	chr10:96305025-96305762	HCT-116	colon:	n/a	n/a
5	BCLAF1	chr10:96304849-96305455	GM12878	blood:	n/a	chr10:96305121-96305134 chr10:96304865-96304874
6	POLR2A	chr10:96304772-96305858	IMR90	lung:	n/a	n/a
7	HCFC1	chr10:96305278-96305923	K562	blood:	n/a	n/a
8	MAX	chr10:96304566-96306414	ECC-1	luminal epithelium:	n/a	n/a
9	SIN3AK20	chr10:96305259-96305726	HepG2	liver:	n/a	n/a
10	EP300	chr10:96304980-96306137	ECC-1	luminal epithelium:	n/a	chr10:96305116-96305132 chr10:96305030-96305039
11	JUND	chr10:96305283-96305779	H1-hESC	embryonic stem cell:	n/a	chr10:96305486-96305495
12	TAF1	chr10:96304719-96305911	H1-hESC	embryonic stem cell:	n/a	n/a
13	POLR2A	chr10:96305006-96305807	HCT-116	colon:	n/a	n/a
14	MYC	chr10:96304993-96305910	K562	blood:	n/a	n/a
15	POLR2A	chr10:96304671-96306338	H1-hESC	embryonic stem cell:	n/a	n/a
16	POLR2A	chr10:96305062-96306012	ECC-1	luminal epithelium:	n/a	n/a
17	PML	chr10:96304968-96305720	GM12878	blood:	n/a	n/a
18	TBP	chr10:96304807-96305767	HepG2	liver:	n/a	chr10:96305638-96305649
19	POLR2A	chr10:96305158-96305500	A549	lung:	n/a	n/a
20	MAZ	chr10:96304779-96305790	GM12878	blood:	n/a	n/a
21	YY1	chr10:96305024-96306293	A549	lung:	n/a	chr10:96305590-96305604
22	CHD2	chr10:96304722-96306201	GM12878	blood:	n/a	chr10:96305518-96305527
23	RFX5	chr10:96304665-96306243	Hela-S3	cervix:	n/a	n/a
24	E2F4	chr10:96304948-96307003	MCF10A-Er-Src	breast:	n/a	chr10:96305537-96305544 chr10:96305537-96305548 chr10:96305535-96305546 chr10:96305469-96305476 chr10:96305537-96305544 chr10:96305487-96305499 chr10:96305537-96305544
25	ZBTB33	chr10:96305133-96306191	SK-N-SH	brain:	n/a	chr10:96305518-96305527 chr10:96305513-96305528
26	MYC	chr10:96304781-96305585	MCF10A-Er-Src	breast:	n/a	n/a
27	POLR2A	chr10:96304686-96306384	GM12892	blood:	n/a	n/a
28	POLR2A	chr10:96304885-96305847	HEK293	kidney:	n/a	n/a
29	POLR2A	chr10:96304743-96306681	GM18505	blood:	n/a	n/a
30	POLR2A	chr10:96304689-96306274	GM15510	blood:	n/a	n/a
31	POLR2A	chr10:96304484-96306788	H1-hESC	embryonic stem cell:	n/a	n/a
32	CHD1	chr10:96304833-96305971	GM12878	blood:	n/a	chr10:96305518-96305527
33	MAX	chr10:96304872-96306386	NB4	blood:	n/a	n/a
34	POLR2A	chr10:96305318-96305920	HL-60	blood:	n/a	n/a
35	PAX5	chr10:96305064-96305483	GM12878	blood:	n/a	n/a
36	BCLAF1	chr10:96304576-96305898	GM12878	blood:	n/a	chr10:96305121-96305134 chr10:96304865-96304874 chr10:96305533-96305542 chr10:96305740-96305753
37	POLR2A	chr10:96304685-96306363	Hela-S3	cervix:	n/a	n/a
38	POLR2A	chr10:96304606-96306183	HepG2	liver:	n/a	n/a
39	RELA	chr10:96304731-96305714	GM19193	blood:	n/a	n/a
40	RELA	chr10:96304788-96306336	GM15510	blood:	n/a	n/a
41	POLR2A	chr10:96305297-96305837	K562	blood:	n/a	n/a
42	E2F4	chr10:96305184-96305969	Hela-S3	cervix:	n/a	chr10:96305537-96305544 chr10:96305537-96305548 chr10:96305535-96305546 chr10:96305469-96305476 chr10:96305537-96305544 chr10:96305487-96305499 chr10:96305537-96305544
43	MYBL2	chr10:96305035-96305862	HepG2	liver:	n/a	n/a
44	ZKSCAN1	chr10:96304752-96305983	Hela-S3	cervix:	n/a	n/a
45	ZNF143	chr10:96305232-96305718	Hela-S3	cervix:	n/a	n/a
46	HA-E2F1	chr10:96305191-96305880	Hela-S3	cervix:	n/a	chr10:96305537-96305544 chr10:96305536-96305547 chr10:96305537-96305548 chr10:96305469-96305476 chr10:96305537-96305544 chr10:96305487-96305499 chr10:96305537-96305544
47	YY1	chr10:96305014-96305364	SK-N-SH_RA	brain:	n/a	n/a
48	POLR2A	chr10:96304848-96305803	HCT-116	colon:	n/a	n/a
49	POLR2A	chr10:96304628-96306320	MCF10A-Er-Src	breast:	n/a	n/a
50	POLR2A	chr10:96305268-96305819	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:96120995..96123181-chr10:96304440..96307322,3	MCF-7	breast:
2	chr10:96160448..96164371-chr10:96304138..96307716,8	MCF-7	breast:
3	chr10:96304723..96305443-chr6:116600681..116601343,2	Hela-S3	cervix:
4	chr10:96304740..96307263-chr10:96312412..96314149,2	MCF-7	breast:
5	chr1:210547353..210547863-chr10:96304947..96305551,2	Hela-S3	cervix:
6	chr10:96159758..96162488-chr10:96305268..96307065,2	K562	blood:
7	chr10:96290006..96295152-chr10:96302633..96306565,5	K562	blood:
8	chr10:96305128..96305906-chr3:50336255..50337029,2	Hela-S3	cervix:
9	chr10:96305041..96305800-chr22:46465255..46466051,2	Hela-S3	cervix:
10	chr10:96305075..96307344-chr10:96312057..96315359,3	K562	blood:
11	chr10:96304986..96305759-chr17:8076339..8077014,2	Hela-S3	cervix:
12	chr10:96305307..96305951-chr16:2058934..2059919,2	Hela-S3	cervix:
13	chr10:96304892..96305576-chr14:90863582..90864410,2	Hela-S3	cervix:

Variant related genes	Relation type
HELLS	TF binding region
ENSG00000108239	Chromatin interaction
ENSG00000200463	Chromatin interaction
ENSG00000235159	Chromatin interaction
ENSG00000189241	Chromatin interaction
ENSG00000198668	Chromatin interaction
ENSG00000200972	Chromatin interaction
ENSG00000243477	Chromatin interaction
ENSG00000173145	Chromatin interaction
ENSG00000119969	Chromatin interaction
ENSG00000186792	Chromatin interaction
ENSG00000111817	Chromatin interaction
ENSG00000167962	Chromatin interaction

Extended variants
information (count: 126 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10786169	1.00[CEU][hapmap];0.83[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10786170	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10882454	0.80[EUR][1000 genomes]
rs10882460	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10882463	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10882469	0.87[EUR][1000 genomes]
rs10882470	0.91[MEX][hapmap];0.86[TSI][hapmap]
rs10882471	0.88[EUR][1000 genomes]
rs10882473	0.87[EUR][1000 genomes]
rs10882474	0.89[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10882477	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10882481	0.81[EUR][1000 genomes]
rs10882486	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11187937	0.82[EUR][1000 genomes]
rs11187938	0.82[AFR][1000 genomes]
rs11187939	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs11187940	0.92[JPT][hapmap]
rs11187944	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[EUR][1000 genomes]
rs11187948	0.91[MEX][hapmap];0.84[TSI][hapmap]
rs11187952	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11187960	1.00[JPT][hapmap]
rs11187972	0.95[CEU][hapmap];0.80[CHB][hapmap];0.83[EUR][1000 genomes]
rs11187973	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11187980	1.00[CEU][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs11187996	0.86[EUR][1000 genomes]
rs11188009	1.00[CEU][hapmap];0.94[CHB][hapmap];0.96[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11188012	0.83[JPT][hapmap];0.81[EUR][1000 genomes]
rs11188015	0.83[EUR][1000 genomes]
rs11188016	0.84[EUR][1000 genomes]
rs11188017	0.86[EUR][1000 genomes]
rs11188019	1.00[CEU][hapmap];0.81[GIH][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11188020	1.00[JPT][hapmap]
rs11188026	0.86[EUR][1000 genomes]
rs11188030	0.85[EUR][1000 genomes]
rs11188038	0.82[EUR][1000 genomes]
rs11188039	0.81[EUR][1000 genomes]
rs11188040	0.87[MEX][hapmap];0.81[EUR][1000 genomes]
rs11188041	0.81[EUR][1000 genomes]
rs11527881	0.84[EUR][1000 genomes]
rs11592354	0.86[EUR][1000 genomes]
rs11638	1.00[CEU][hapmap];0.91[GIH][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12218213	0.87[MEX][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs12218216	0.87[MEX][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs12219906	0.87[MEX][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes]
rs12220588	0.87[MEX][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes]
rs12221475	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12572040	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12762574	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1326839	0.94[ASW][hapmap];0.92[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.91[LWK][hapmap];0.88[MKK][hapmap];0.91[TSI][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1334595	1.00[JPT][hapmap]
rs1359262	0.85[EUR][1000 genomes]
rs1359263	0.87[MEX][hapmap];0.81[TSI][hapmap];0.80[EUR][1000 genomes]
rs1409655	1.00[JPT][hapmap]
rs1749352	0.82[EUR][1000 genomes]
rs1854035	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1889485	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1889486	0.91[MEX][hapmap];0.86[TSI][hapmap]
rs1931757	0.83[JPT][hapmap]
rs1969815	0.85[CEU][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap];0.84[EUR][1000 genomes]
rs1977288	1.00[JPT][hapmap]
rs1977289	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1977290	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1977291	0.83[JPT][hapmap]
rs1980741	1.00[CEU][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes]
rs2012670	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2095380	0.84[EUR][1000 genomes]
rs2148553	0.81[EUR][1000 genomes]
rs2265364	0.82[EUR][1000 genomes]
rs2274096	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2274417	0.87[MEX][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs2281791	0.89[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2860821	0.87[MEX][hapmap];0.81[TSI][hapmap];0.84[EUR][1000 genomes]
rs2860840	1.00[JPT][hapmap]
rs2901765	0.82[EUR][1000 genomes]
rs34814196	0.85[EUR][1000 genomes]
rs3740358	0.94[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.85[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3758522	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3758523	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3781262	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4351744	0.84[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.83[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes]
rs4421688	0.85[EUR][1000 genomes]
rs480032	1.00[JPT][hapmap]
rs4918333	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4918401	0.85[EUR][1000 genomes]
rs4918402	0.94[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4918403	0.83[EUR][1000 genomes]
rs4918404	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4918409	0.85[CEU][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs4918411	0.82[EUR][1000 genomes]
rs4918412	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4918417	0.81[EUR][1000 genomes]
rs4918418	0.82[EUR][1000 genomes]
rs4918419	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs517784	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs556055	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs6583942	1.00[JPT][hapmap]
rs6583943	0.84[EUR][1000 genomes]
rs6583944	0.85[CEU][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes]
rs6583945	0.86[EUR][1000 genomes]
rs6583946	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs68046102	0.81[EUR][1000 genomes]
rs692872	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs701885	0.94[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7068337	0.83[EUR][1000 genomes]
rs7073639	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7075182	0.88[JPT][hapmap]
rs7078236	0.85[EUR][1000 genomes]
rs7078478	0.83[JPT][hapmap]
rs7078811	1.00[CEU][hapmap];0.91[GIH][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7079934	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7083898	1.00[CEU][hapmap];0.83[JPT][hapmap];0.85[EUR][1000 genomes]
rs7087798	0.83[JPT][hapmap]
rs7089094	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7092129	1.00[JPT][hapmap]
rs7100415	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7906843	0.96[CEU][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7906968	0.81[EUR][1000 genomes]
rs7913343	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7921721	1.00[CEU][hapmap];0.98[GIH][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes]
rs912466	0.91[MEX][hapmap];0.86[TSI][hapmap]
rs9420641	0.82[EUR][1000 genomes]
rs9633675	0.82[AFR][1000 genomes]
rs9633699	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1053747	chr10:96211618-96366396	Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10786168	KIF11	cis	cerebellum	SCAN
rs10786168	HELLS	cis	cerebellum	SCAN
rs10786168	FGFBP3	cis	cerebellum	SCAN
rs10786168	C19orf22	trans	cerebellum	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96304200-96306200	Active TSS	Colonic Mucosa	Colon
2	chr10:96304200-96306400	Active TSS	HSMM	muscle
3	chr10:96304200-96306800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:96304200-96306800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr10:96304200-96307000	Active TSS	A549	lung
6	chr10:96304400-96305400	Flanking Active TSS	Liver	Liver
7	chr10:96304400-96305800	Active TSS	Breast Myoepithelial Primary Cells	Breast
8	chr10:96304400-96305800	Active TSS	Duodenum Smooth Muscle	Duodenum
9	chr10:96304400-96306000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:96304400-96306200	Active TSS	iPS-18 Cell Line	embryonic stem cell
11	chr10:96304400-96306200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:96304400-96306200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr10:96304400-96306200	Active TSS	HMEC	breast
14	chr10:96304400-96306200	Active TSS	NH-A	brain
15	chr10:96304400-96306400	Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr10:96304400-96306400	Active TSS	HUES6 Cell Line	embryonic stem cell
17	chr10:96304400-96306400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:96304400-96306600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:96304400-96306600	Active TSS	NHDF-Ad	bronchial
20	chr10:96304400-96306800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr10:96304400-96306800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:96304400-96306800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr10:96304400-96307000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:96304400-96307000	Active TSS	Muscle Satellite Cultured Cells	--
25	chr10:96304400-96307200	Active TSS	GM12878-XiMat	blood
26	chr10:96304400-96307400	Active TSS	ES-I3 Cell Line	embryonic stem cell
27	chr10:96304400-96307400	Active TSS	K562	blood
28	chr10:96304400-96307600	Active TSS	NHLF	lung
29	chr10:96304400-96309000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr10:96304600-96305400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
31	chr10:96304600-96305400	Flanking Active TSS	Primary hematopoietic stem cells	blood
32	chr10:96304600-96305400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
33	chr10:96304600-96305400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
34	chr10:96304600-96305600	Active TSS	Fetal Muscle Trunk	muscle
35	chr10:96304600-96306000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr10:96304600-96306000	Active TSS	Brain Anterior Caudate	brain
37	chr10:96304600-96306000	Active TSS	Brain Cingulate Gyrus	brain
38	chr10:96304600-96306000	Active TSS	Colon Smooth Muscle	Colon
39	chr10:96304600-96306200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
40	chr10:96304600-96306200	Active TSS	Aorta	Aorta
41	chr10:96304600-96306200	Active TSS	Ovary	ovary
42	chr10:96304600-96306200	Active TSS	Psoas Muscle	Psoas
43	chr10:96304600-96306400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr10:96304600-96306400	Active TSS	HUES64 Cell Line	embryonic stem cell
45	chr10:96304600-96306400	Active TSS	iPS-20b Cell Line	embryonic stem cell
46	chr10:96304600-96306400	Active TSS	Fetal Brain Female	brain
47	chr10:96304600-96306400	Active TSS	Fetal Heart	heart
48	chr10:96304600-96306400	Active TSS	Pancreatic Islets	Pancreatic Islet
49	chr10:96304600-96306400	Active TSS	Fetal Lung	lung
50	chr10:96304600-96306400	Active TSS	Placenta Amnion	Placenta Amnion

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