Variant report

Variant	rs34814196
Chromosome Location	chr10:96314393-96314394
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96305075..96307344-chr10:96312057..96315359,3	K562	blood:

Variant related genes	Relation type
ENSG00000119969	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs1018602	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10786168	0.85[EUR][1000 genomes]
rs10786169	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1079504	0.82[EUR][1000 genomes]
rs10882470	0.86[EUR][1000 genomes]
rs10882473	0.82[EUR][1000 genomes]
rs10882474	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10882477	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10882481	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11187958	0.83[EUR][1000 genomes]
rs11187966	0.84[EUR][1000 genomes]
rs11188005	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11188009	0.83[EUR][1000 genomes]
rs11188015	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188016	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11188017	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188019	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11188026	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11188030	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188038	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188039	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188040	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188041	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11638	0.80[EUR][1000 genomes]
rs12218213	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12218216	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12219906	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12220588	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12570013	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12573638	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1326838	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1326839	0.83[EUR][1000 genomes]
rs1359263	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1749356	0.81[EUR][1000 genomes]
rs1854034	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1854035	0.83[EUR][1000 genomes]
rs1969815	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1977290	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2012670	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2148553	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2265362	0.82[EUR][1000 genomes]
rs2274096	0.85[EUR][1000 genomes]
rs2274417	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2281791	0.82[EUR][1000 genomes]
rs2860760	0.83[EUR][1000 genomes]
rs2860821	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901764	0.82[EUR][1000 genomes]
rs35774063	0.86[EUR][1000 genomes]
rs3740358	0.80[EUR][1000 genomes]
rs3758522	0.82[EUR][1000 genomes]
rs3758523	0.82[EUR][1000 genomes]
rs3781262	0.84[EUR][1000 genomes]
rs4316436	0.86[EUR][1000 genomes]
rs4421688	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4611135	0.82[EUR][1000 genomes]
rs4918401	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918402	0.86[EUR][1000 genomes]
rs4918403	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918404	0.86[EUR][1000 genomes]
rs4918409	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4918411	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4918412	0.82[EUR][1000 genomes]
rs4918417	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4918418	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4918419	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs522111	0.81[EUR][1000 genomes]
rs542540	0.80[EUR][1000 genomes]
rs56020662	0.84[EUR][1000 genomes]
rs576517	0.81[EUR][1000 genomes]
rs6583944	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583945	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583946	0.84[EUR][1000 genomes]
rs68046102	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs701885	0.80[EUR][1000 genomes]
rs7068337	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7078811	0.82[EUR][1000 genomes]
rs7079934	0.87[EUR][1000 genomes]
rs7086462	0.85[EUR][1000 genomes]
rs7087472	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7906843	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7906968	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs912466	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs945123	0.80[EUR][1000 genomes]
rs955694	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1053747	chr10:96211618-96366396	Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96306200-96318600	Weak transcription	Aorta	Aorta
2	chr10:96306400-96314400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:96306400-96321200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:96306400-96325400	Weak transcription	Lung	lung
5	chr10:96306400-96330600	Weak transcription	Placenta	Placenta
6	chr10:96306400-96357200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:96306400-96365600	Weak transcription	Esophagus	oesophagus
8	chr10:96306400-96370400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr10:96306400-96370600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr10:96306400-96371000	Weak transcription	Ovary	ovary
11	chr10:96306600-96349800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr10:96306600-96353800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:96306600-96379200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:96306800-96314400	Weak transcription	Fetal Muscle Leg	muscle
15	chr10:96306800-96314600	Weak transcription	Thymus	Thymus
16	chr10:96306800-96315800	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr10:96306800-96317200	Weak transcription	Primary B cells from peripheral blood	blood
18	chr10:96306800-96317200	Weak transcription	Fetal Intestine Large	intestine
19	chr10:96306800-96318600	Weak transcription	HSMM	muscle
20	chr10:96306800-96323000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr10:96306800-96330400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr10:96306800-96348000	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr10:96306800-96348200	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr10:96306800-96348400	Weak transcription	Primary B cells from cord blood	blood
25	chr10:96306800-96349800	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr10:96306800-96357200	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr10:96306800-96373000	Weak transcription	Primary T cells from cord blood	blood
28	chr10:96307000-96314400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr10:96307000-96314800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr10:96307000-96358200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:96307000-96375000	Weak transcription	Osteobl	bone
32	chr10:96307200-96314800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:96307200-96315000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr10:96307200-96315800	Weak transcription	NH-A	brain
35	chr10:96307200-96318600	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr10:96307200-96320000	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr10:96307200-96371200	Weak transcription	Fetal Brain Male	brain
38	chr10:96307600-96314600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr10:96307600-96314600	Weak transcription	Fetal Brain Female	brain
40	chr10:96307600-96314800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr10:96307600-96315600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr10:96307600-96316600	Weak transcription	Fetal Lung	lung
43	chr10:96307600-96318800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr10:96307600-96325400	Weak transcription	NHLF	lung
45	chr10:96307600-96327800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr10:96307600-96356000	Weak transcription	NHDF-Ad	bronchial
47	chr10:96307600-96373200	Weak transcription	Brain Germinal Matrix	brain
48	chr10:96307800-96314400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr10:96307800-96315800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr10:96307800-96348200	Weak transcription	NHEK	skin

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