Variant report

Variant	rs1326839
Chromosome Location	chr10:96360760-96360761
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs1018602	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10786168	0.94[ASW][hapmap];0.92[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.91[LWK][hapmap];0.88[MKK][hapmap];0.91[TSI][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10786169	0.92[CEU][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10786170	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10882460	0.94[ASW][hapmap];0.92[CEU][hapmap];0.88[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.91[LWK][hapmap];0.88[MKK][hapmap];0.93[TSI][hapmap];0.92[YRI][hapmap];0.82[EUR][1000 genomes]
rs10882463	0.94[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.91[LWK][hapmap];0.80[MKK][hapmap];0.93[TSI][hapmap];0.92[YRI][hapmap];0.82[EUR][1000 genomes]
rs10882469	0.84[EUR][1000 genomes]
rs10882471	0.85[EUR][1000 genomes]
rs10882473	0.85[EUR][1000 genomes]
rs10882474	0.84[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.87[LWK][hapmap];0.91[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882477	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882481	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10882486	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11187937	0.81[EUR][1000 genomes]
rs11187939	0.92[CEU][hapmap];0.82[CHB][hapmap];0.93[JPT][hapmap];0.80[EUR][1000 genomes]
rs11187940	0.84[JPT][hapmap]
rs11187944	0.92[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap];0.80[EUR][1000 genomes]
rs11187952	0.92[CEU][hapmap];0.88[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.93[TSI][hapmap]
rs11187960	0.94[JPT][hapmap]
rs11187972	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs11187973	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11187980	0.92[CEU][hapmap];0.89[GIH][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs11187996	0.84[EUR][1000 genomes]
rs11188009	0.92[CEU][hapmap];0.88[CHB][hapmap];0.84[CHD][hapmap];0.91[GIH][hapmap];0.94[JPT][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188015	0.81[EUR][1000 genomes]
rs11188016	0.83[EUR][1000 genomes]
rs11188017	0.84[EUR][1000 genomes]
rs11188019	0.92[CEU][hapmap];0.84[CHB][hapmap];0.87[GIH][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11188020	1.00[JPT][hapmap]
rs11188026	0.84[EUR][1000 genomes]
rs11188030	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11188038	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11188039	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11188040	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11188041	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11527881	0.82[EUR][1000 genomes]
rs11592354	0.84[EUR][1000 genomes]
rs11638	0.92[CEU][hapmap];0.84[CHB][hapmap];0.98[GIH][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12218213	0.85[EUR][1000 genomes]
rs12218216	0.86[EUR][1000 genomes]
rs12219906	0.82[TSI][hapmap];0.83[EUR][1000 genomes]
rs12220588	0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12221475	0.92[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs12570013	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12572040	0.86[EUR][1000 genomes]
rs12762574	0.82[EUR][1000 genomes]
rs1326838	0.82[EUR][1000 genomes]
rs1334595	0.94[JPT][hapmap]
rs1359262	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1359263	0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1409655	0.94[JPT][hapmap]
rs1749352	0.80[EUR][1000 genomes]
rs1854034	0.81[EUR][1000 genomes]
rs1854035	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1889485	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1969815	0.82[TSI][hapmap];0.82[EUR][1000 genomes]
rs1977288	0.94[JPT][hapmap]
rs1977290	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1980741	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs2095380	0.81[EUR][1000 genomes]
rs2148553	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2274096	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2274417	0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2281791	0.84[ASW][hapmap];0.92[CEU][hapmap];0.88[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.85[LWK][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2860821	0.82[TSI][hapmap];0.82[EUR][1000 genomes]
rs2860840	0.93[JPT][hapmap]
rs34814196	0.83[EUR][1000 genomes]
rs3740358	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.94[LWK][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3758522	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3758523	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3781262	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4351744	0.92[CEU][hapmap];0.91[GIH][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs4421688	0.84[EUR][1000 genomes]
rs480032	0.94[JPT][hapmap]
rs4918333	0.81[EUR][1000 genomes]
rs4918401	0.83[EUR][1000 genomes]
rs4918402	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.98[LWK][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4918403	0.81[EUR][1000 genomes]
rs4918404	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4918409	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4918411	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4918412	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4918417	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4918418	0.88[EUR][1000 genomes]
rs4918419	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs517784	0.92[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs556055	0.92[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs6583942	0.94[JPT][hapmap]
rs6583943	0.82[EUR][1000 genomes]
rs6583944	0.84[EUR][1000 genomes]
rs6583945	0.84[EUR][1000 genomes]
rs6583946	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs68046102	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs692872	0.92[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.91[TSI][hapmap];0.80[EUR][1000 genomes]
rs701885	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.93[LWK][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7068337	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7075182	0.82[JPT][hapmap]
rs7078236	0.83[EUR][1000 genomes]
rs7078811	0.92[CEU][hapmap];0.84[CHB][hapmap];0.98[GIH][hapmap];0.97[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7079934	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7083898	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs7092129	0.94[JPT][hapmap]
rs7100415	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7906843	0.96[CEU][hapmap];0.84[CHB][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];0.93[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7906968	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7913343	0.91[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap];0.80[EUR][1000 genomes]
rs7921721	0.92[CEU][hapmap];0.91[GIH][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs9420641	0.80[EUR][1000 genomes]
rs9633699	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1053747	chr10:96211618-96366396	Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv517681	chr10:96343228-96387079	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96306400-96365600	Weak transcription	Esophagus	oesophagus
2	chr10:96306400-96370400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:96306400-96370600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr10:96306400-96371000	Weak transcription	Ovary	ovary
5	chr10:96306600-96379200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:96306800-96373000	Weak transcription	Primary T cells from cord blood	blood
7	chr10:96307000-96375000	Weak transcription	Osteobl	bone
8	chr10:96307200-96371200	Weak transcription	Fetal Brain Male	brain
9	chr10:96307600-96373200	Weak transcription	Brain Germinal Matrix	brain
10	chr10:96307800-96373000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:96308000-96373200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:96309600-96372800	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr10:96309600-96377000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr10:96312800-96372200	Strong transcription	Dnd41	blood
15	chr10:96314200-96373400	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr10:96315000-96369200	Weak transcription	Fetal Kidney	kidney
17	chr10:96316000-96371400	Weak transcription	Fetal Brain Female	brain
18	chr10:96316000-96374000	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr10:96316200-96373000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr10:96317000-96372600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr10:96324000-96376600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr10:96324200-96365600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:96325800-96376000	Weak transcription	NHLF	lung
24	chr10:96331000-96377400	Weak transcription	Placenta	Placenta
25	chr10:96331200-96361800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:96338800-96372000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr10:96345400-96371200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr10:96345600-96372400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr10:96346600-96360800	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr10:96346600-96372600	Strong transcription	H1 Cell Line	embryonic stem cell
31	chr10:96347200-96368000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr10:96347800-96362000	Strong transcription	Hela-S3	cervix
33	chr10:96348000-96369600	Weak transcription	Fetal Heart	heart
34	chr10:96348200-96364800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr10:96348400-96361800	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr10:96348600-96360800	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr10:96348600-96364200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr10:96348600-96371400	Weak transcription	NHEK	skin
39	chr10:96349200-96371000	Weak transcription	Primary B cells from cord blood	blood
40	chr10:96349800-96361600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr10:96350000-96362000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr10:96350200-96364200	Weak transcription	Spleen	Spleen
43	chr10:96350600-96368000	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr10:96350600-96371800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr10:96351400-96371000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr10:96351600-96361400	Weak transcription	NH-A	brain
47	chr10:96352000-96363200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr10:96353000-96363000	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr10:96354200-96365400	Weak transcription	Gastric	stomach
50	chr10:96354400-96365000	Weak transcription	Fetal Intestine Small	intestine

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