Variant report

Variant	rs11187940
Chromosome Location	chr10:96186712-96186713
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96162267..96164235-chr10:96185502..96188240,3	MCF-7	breast:
2	chr10:96162115..96165000-chr10:96185811..96187803,2	K562	blood:

Variant related genes	Relation type
ENSG00000108239	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10786168	0.92[JPT][hapmap]
rs10882460	0.92[JPT][hapmap]
rs10882463	0.92[JPT][hapmap]
rs10882474	0.92[JPT][hapmap]
rs10882477	0.93[JPT][hapmap]
rs11187930	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11187938	0.88[ASN][1000 genomes]
rs11187939	1.00[JPT][hapmap]
rs11187944	0.92[JPT][hapmap]
rs11187952	0.92[JPT][hapmap]
rs11187960	1.00[CEU][hapmap];0.92[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188009	0.92[JPT][hapmap]
rs11188020	1.00[CEU][hapmap];0.91[JPT][hapmap];0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12221475	0.92[JPT][hapmap]
rs1326839	0.84[JPT][hapmap]
rs1334595	0.95[CEU][hapmap];0.92[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1931757	0.95[CEU][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1977288	0.95[CEU][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes]
rs1977291	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs2265366	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2281791	0.92[JPT][hapmap]
rs2764378	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3740358	0.92[JPT][hapmap]
rs3781262	1.00[JPT][hapmap]
rs4564258	0.80[EUR][1000 genomes]
rs480032	0.95[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4918402	0.92[JPT][hapmap]
rs517784	0.93[JPT][hapmap]
rs555782	0.80[ASN][1000 genomes]
rs556055	0.93[JPT][hapmap]
rs6583941	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6583942	0.95[CEU][hapmap];0.93[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs692872	0.92[JPT][hapmap]
rs701885	0.92[JPT][hapmap]
rs7075182	0.85[AFR][1000 genomes]
rs7078478	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs7087798	0.91[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7088008	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7092129	0.95[CEU][hapmap];0.92[JPT][hapmap]
rs7096007	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7393240	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7900007	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7913343	0.93[JPT][hapmap]
rs7922956	0.81[EUR][1000 genomes]
rs9633675	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	esv1815355	chr10:96162545-96189900	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	esv1817623	chr10:96162545-96189900	Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96164800-96188200	Weak transcription	Right Atrium	heart
2	chr10:96171600-96188200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:96171800-96198200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:96173400-96188400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:96173600-96190200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr10:96181400-96187800	Weak transcription	Brain Substantia Nigra	brain
7	chr10:96182800-96186800	Weak transcription	Brain Hippocampus Middle	brain
8	chr10:96183000-96191600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:96183600-96188400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:96183800-96188200	Weak transcription	NH-A	brain
11	chr10:96184200-96188200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr10:96184400-96187800	Weak transcription	Osteobl	bone
13	chr10:96184600-96188200	Weak transcription	HSMM	muscle
14	chr10:96184600-96191800	Weak transcription	HSMMtube	muscle
15	chr10:96184800-96188200	Weak transcription	Aorta	Aorta
16	chr10:96184800-96199200	Weak transcription	Gastric	stomach
17	chr10:96185000-96188200	Weak transcription	Fetal Stomach	stomach
18	chr10:96186600-96187400	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr10:96186600-96187400	Enhancers	Monocytes-CD14+_RO01746	blood

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