Variant report

Variant	rs555782
Chromosome Location	chr10:96148536-96148537
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96146940..96149241-chr10:96165094..96167503,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10882454	0.83[EUR][1000 genomes]
rs10882460	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10882463	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11187937	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11187938	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11187939	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11187940	0.80[ASN][1000 genomes]
rs11187944	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11187952	0.81[EUR][1000 genomes]
rs11187980	0.80[EUR][1000 genomes]
rs11188012	0.84[EUR][1000 genomes]
rs11527881	0.81[EUR][1000 genomes]
rs12221475	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12762574	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1749352	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1977289	0.83[EUR][1000 genomes]
rs1980741	0.81[EUR][1000 genomes]
rs2095380	0.81[EUR][1000 genomes]
rs2265364	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2265366	0.89[ASN][1000 genomes]
rs2477534	0.81[ASN][1000 genomes]
rs4351744	0.81[EUR][1000 genomes]
rs480032	0.83[ASN][1000 genomes]
rs4918333	0.80[EUR][1000 genomes]
rs517784	0.83[EUR][1000 genomes]
rs556055	0.83[EUR][1000 genomes]
rs692872	0.83[EUR][1000 genomes]
rs7073639	0.81[EUR][1000 genomes]
rs7078236	0.80[EUR][1000 genomes]
rs7089094	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7895305	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7913343	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7921721	0.81[EUR][1000 genomes]
rs9420641	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9633675	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9633699	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	esv3398177	chr10:96139011-96169931	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	esv3411992	chr10:96139011-96172041	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96143200-96155400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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