Variant report

Variant	rs9633675
Chromosome Location	chr10:96210400-96210401
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10786168	0.82[AFR][1000 genomes]
rs10882460	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10882463	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11187937	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11187938	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11187939	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11187940	0.84[ASN][1000 genomes]
rs11187944	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11187952	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11187960	0.90[ASN][1000 genomes]
rs11187972	0.82[EUR][1000 genomes]
rs11187973	0.82[EUR][1000 genomes]
rs11187980	0.83[EUR][1000 genomes]
rs11187998	0.80[EUR][1000 genomes]
rs11188012	0.87[EUR][1000 genomes]
rs11527881	0.84[EUR][1000 genomes]
rs12221475	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12762574	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1334595	0.80[ASN][1000 genomes]
rs1889485	0.82[EUR][1000 genomes]
rs1977289	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1980741	0.83[EUR][1000 genomes]
rs2095380	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2265364	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2901765	0.81[EUR][1000 genomes]
rs4351744	0.83[EUR][1000 genomes]
rs480032	0.82[ASN][1000 genomes]
rs4918333	0.83[EUR][1000 genomes]
rs517784	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs555782	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs556055	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6583941	0.88[ASN][1000 genomes]
rs6583942	0.80[ASN][1000 genomes]
rs6583943	0.80[EUR][1000 genomes]
rs692872	0.80[ASN][1000 genomes]
rs7073639	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7078236	0.83[EUR][1000 genomes]
rs7083898	0.81[EUR][1000 genomes]
rs7088008	0.84[ASN][1000 genomes]
rs7089094	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7895305	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7913343	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7921721	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9420641	0.80[AMR][1000 genomes]
rs9633699	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96188400-96213600	Weak transcription	Stomach Mucosa	stomach
2	chr10:96190800-96234600	Weak transcription	Osteobl	bone
3	chr10:96192000-96211400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:96198400-96218200	Weak transcription	Aorta	Aorta
5	chr10:96199200-96211200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr10:96199200-96215400	Weak transcription	Fetal Stomach	stomach
7	chr10:96199400-96211200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:96199400-96211400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr10:96199400-96211400	Weak transcription	Psoas Muscle	Psoas
10	chr10:96199400-96212000	Weak transcription	Adipose Nuclei	Adipose
11	chr10:96199400-96215200	Weak transcription	Placenta	Placenta
12	chr10:96199400-96219600	Weak transcription	Pancreas	Pancrea
13	chr10:96200200-96211400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:96200200-96219400	Weak transcription	Left Ventricle	heart
15	chr10:96200600-96211200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:96201200-96219200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr10:96203000-96218600	Weak transcription	Ovary	ovary
18	chr10:96203000-96239600	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr10:96203200-96215400	Weak transcription	Fetal Intestine Small	intestine
20	chr10:96203400-96212000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr10:96203400-96242800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr10:96203600-96211400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr10:96203600-96218400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr10:96203800-96211200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:96203800-96211200	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr10:96203800-96211400	Weak transcription	Brain Substantia Nigra	brain
27	chr10:96203800-96217200	Weak transcription	HepG2	liver
28	chr10:96203800-96219600	Weak transcription	Brain Angular Gyrus	brain
29	chr10:96204000-96221000	Weak transcription	Liver	Liver
30	chr10:96204200-96210400	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr10:96204200-96211200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr10:96204200-96212000	Weak transcription	Brain Anterior Caudate	brain
33	chr10:96204200-96213400	Weak transcription	A549	lung
34	chr10:96204200-96243400	Weak transcription	Stomach Smooth Muscle	stomach
35	chr10:96206200-96218000	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr10:96207600-96213200	Weak transcription	HUVEC	blood vessel
37	chr10:96209000-96218400	Weak transcription	Lung	lung
38	chr10:96209200-96211200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr10:96209400-96213000	Strong transcription	HSMM	muscle
40	chr10:96209600-96219600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr10:96210200-96211200	Weak transcription	Fetal Heart	heart
42	chr10:96210200-96211400	Weak transcription	Brain Hippocampus Middle	brain
43	chr10:96210200-96211400	Weak transcription	Fetal Lung	lung
44	chr10:96210200-96215800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr10:96210200-96248800	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr10:96210400-96211600	Enhancers	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links