Variant report

Variant	rs11187944
Chromosome Location	chr10:96188251-96188252
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs10786168	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[EUR][1000 genomes]
rs10786169	1.00[CEU][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes]
rs1079504	0.84[EUR][1000 genomes]
rs10882452	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10882454	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10882460	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882463	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882469	0.89[EUR][1000 genomes]
rs10882471	0.90[EUR][1000 genomes]
rs10882473	0.88[EUR][1000 genomes]
rs10882474	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10882477	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs11187937	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187938	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11187939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187940	0.92[JPT][hapmap]
rs11187948	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11187952	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11187958	0.82[EUR][1000 genomes]
rs11187960	1.00[JPT][hapmap]
rs11187966	0.83[EUR][1000 genomes]
rs11187972	0.95[CEU][hapmap];0.95[EUR][1000 genomes]
rs11187973	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11187980	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11187996	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11188009	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11188012	0.83[JPT][hapmap]
rs11188019	1.00[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs11188020	1.00[JPT][hapmap]
rs11527881	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11592354	0.91[EUR][1000 genomes]
rs11638	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs12221475	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12572040	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12762574	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1326839	0.92[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap];0.80[EUR][1000 genomes]
rs1334595	1.00[JPT][hapmap]
rs1749352	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1749355	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1749356	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1854035	0.80[EUR][1000 genomes]
rs1886272	0.85[EUR][1000 genomes]
rs1889485	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1889486	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1931757	0.82[JPT][hapmap]
rs1969815	0.87[CEU][hapmap]
rs1977288	1.00[JPT][hapmap]
rs1977291	0.82[JPT][hapmap]
rs1980741	1.00[CEU][hapmap];0.83[JPT][hapmap];0.95[EUR][1000 genomes]
rs2095380	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2148553	0.81[CEU][hapmap]
rs2244241	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2265362	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2265364	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2274096	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2281791	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2860760	0.83[EUR][1000 genomes]
rs2901764	0.82[EUR][1000 genomes]
rs2901765	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3740358	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs3758523	0.81[EUR][1000 genomes]
rs3781262	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs4351744	1.00[CEU][hapmap];0.82[JPT][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4611135	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs479664	0.82[EUR][1000 genomes]
rs480032	1.00[JPT][hapmap]
rs4917505	0.92[EUR][1000 genomes]
rs4918333	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4918402	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.83[EUR][1000 genomes]
rs4918404	0.83[EUR][1000 genomes]
rs4918409	0.87[CEU][hapmap]
rs4918417	0.81[CEU][hapmap]
rs4918419	0.88[CEU][hapmap]
rs493088	0.81[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs517784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs522111	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs541704	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs542540	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs555782	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs556055	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56020662	0.83[EUR][1000 genomes]
rs576517	0.85[EUR][1000 genomes]
rs581165	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6583942	1.00[JPT][hapmap]
rs6583943	0.92[EUR][1000 genomes]
rs6583944	0.87[CEU][hapmap]
rs6583946	0.81[EUR][1000 genomes]
rs692872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs701885	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs7073639	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7078236	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7078478	0.82[JPT][hapmap]
rs7078811	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs7079934	0.84[EUR][1000 genomes]
rs7083898	1.00[CEU][hapmap];0.83[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7086462	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs7087798	0.82[JPT][hapmap]
rs7089094	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7092129	1.00[JPT][hapmap]
rs7393251	0.80[EUR][1000 genomes]
rs7895305	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7898330	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7906843	0.96[CEU][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs7913343	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7921721	1.00[CEU][hapmap];0.82[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8181426	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs912466	0.82[EUR][1000 genomes]
rs9420641	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs945123	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs955694	0.83[EUR][1000 genomes]
rs9633675	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9633699	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	esv1815355	chr10:96162545-96189900	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	esv1817623	chr10:96162545-96189900	Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96171800-96198200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:96173400-96188400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:96173600-96190200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr10:96183000-96191600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:96183600-96188400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:96184600-96191800	Weak transcription	HSMMtube	muscle
7	chr10:96184800-96199200	Weak transcription	Gastric	stomach
8	chr10:96186800-96188600	Enhancers	Brain Hippocampus Middle	brain
9	chr10:96187400-96190200	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr10:96187400-96190200	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr10:96187800-96188400	Enhancers	Brain Anterior Caudate	brain
12	chr10:96187800-96189800	Enhancers	Brain Substantia Nigra	brain
13	chr10:96187800-96189800	Enhancers	Ovary	ovary
14	chr10:96187800-96190800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:96187800-96190800	Enhancers	Adipose Nuclei	Adipose
16	chr10:96187800-96190800	Enhancers	Osteobl	bone
17	chr10:96188000-96189000	Enhancers	NHDF-Ad	bronchial
18	chr10:96188000-96190000	Enhancers	Fetal Muscle Leg	muscle
19	chr10:96188200-96188400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:96188200-96188400	Enhancers	Stomach Mucosa	stomach
21	chr10:96188200-96188600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:96188200-96188600	Enhancers	Aorta	Aorta
23	chr10:96188200-96188600	Enhancers	Pancreas	Pancrea
24	chr10:96188200-96188800	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr10:96188200-96188800	Enhancers	Esophagus	oesophagus
26	chr10:96188200-96188800	Enhancers	Lung	lung
27	chr10:96188200-96188800	Enhancers	Right Atrium	heart
28	chr10:96188200-96189600	Enhancers	Fetal Stomach	stomach
29	chr10:96188200-96189600	Enhancers	NH-A	brain
30	chr10:96188200-96189800	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr10:96188200-96190000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr10:96188200-96190000	Enhancers	HSMM	muscle
33	chr10:96188200-96190600	Enhancers	Muscle Satellite Cultured Cells	--

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