Variant report

Variant	rs7895305
Chromosome Location	chr10:96200796-96200797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96162530..96165019-chr10:96199067..96201077,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10882454	0.81[EUR][1000 genomes]
rs10882460	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10882463	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11187937	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11187938	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11187939	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11187944	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11187952	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11187972	0.81[EUR][1000 genomes]
rs11187973	0.82[EUR][1000 genomes]
rs11187980	0.82[EUR][1000 genomes]
rs11188012	0.87[EUR][1000 genomes]
rs11527881	0.83[EUR][1000 genomes]
rs12221475	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12762574	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1749352	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1889485	0.81[EUR][1000 genomes]
rs1977289	0.86[EUR][1000 genomes]
rs1980741	0.82[EUR][1000 genomes]
rs2095380	0.83[EUR][1000 genomes]
rs2265364	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2901765	0.80[EUR][1000 genomes]
rs4351744	0.83[EUR][1000 genomes]
rs4918333	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs517784	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs555782	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs556055	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs692872	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7073639	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7078236	0.82[EUR][1000 genomes]
rs7083898	0.81[EUR][1000 genomes]
rs7089094	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7913343	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7921721	0.83[EUR][1000 genomes]
rs8181426	0.83[ASN][1000 genomes]
rs9420641	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9633675	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9633699	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96188400-96213600	Weak transcription	Stomach Mucosa	stomach
2	chr10:96190800-96234600	Weak transcription	Osteobl	bone
3	chr10:96192000-96211400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:96198400-96202800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:96198400-96218200	Weak transcription	Aorta	Aorta
6	chr10:96199200-96211200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr10:96199200-96215400	Weak transcription	Fetal Stomach	stomach
8	chr10:96199400-96202200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:96199400-96202200	Weak transcription	Brain Hippocampus Middle	brain
10	chr10:96199400-96202400	Weak transcription	HSMM	muscle
11	chr10:96199400-96202800	Weak transcription	Brain Angular Gyrus	brain
12	chr10:96199400-96202800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr10:96199400-96202800	Weak transcription	Brain Substantia Nigra	brain
14	chr10:96199400-96202800	Weak transcription	Fetal Muscle Trunk	muscle
15	chr10:96199400-96202800	Weak transcription	Ovary	ovary
16	chr10:96199400-96203000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:96199400-96203400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr10:96199400-96204000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr10:96199400-96204000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr10:96199400-96207000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:96199400-96211200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr10:96199400-96211400	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr10:96199400-96211400	Weak transcription	Psoas Muscle	Psoas
24	chr10:96199400-96212000	Weak transcription	Adipose Nuclei	Adipose
25	chr10:96199400-96215200	Weak transcription	Placenta	Placenta
26	chr10:96199400-96219600	Weak transcription	Pancreas	Pancrea
27	chr10:96199600-96201200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr10:96199600-96202800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr10:96199800-96203200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr10:96200200-96211400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:96200200-96219400	Weak transcription	Left Ventricle	heart
32	chr10:96200600-96202800	Weak transcription	HepG2	liver
33	chr10:96200600-96211200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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