Variant report

Variant	rs8181426
Chromosome Location	chr10:96198669-96198670
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96169823..96172016-chr10:96197395..96199700,2	MCF-7	breast:
2	chr10:96198485..96200699-chr10:96202037..96204075,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10882452	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10882454	0.88[EUR][1000 genomes]
rs10882460	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10882463	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10882469	0.82[EUR][1000 genomes]
rs10882471	0.83[EUR][1000 genomes]
rs11187937	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11187939	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11187944	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11187948	0.89[AFR][1000 genomes]
rs11187952	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11187972	0.86[EUR][1000 genomes]
rs11187973	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11187980	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11187996	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11527881	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11592354	0.82[EUR][1000 genomes]
rs12221475	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12572040	0.83[EUR][1000 genomes]
rs12762574	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1749352	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1889485	0.86[EUR][1000 genomes]
rs1889486	0.88[AFR][1000 genomes]
rs1980741	0.88[EUR][1000 genomes]
rs2095380	0.88[EUR][1000 genomes]
rs2265364	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2901765	0.85[EUR][1000 genomes]
rs4316436	0.83[AFR][1000 genomes]
rs4351744	0.88[EUR][1000 genomes]
rs4917505	0.86[EUR][1000 genomes]
rs4918333	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs517784	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs556055	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6583943	0.84[EUR][1000 genomes]
rs692872	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7073639	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7078236	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7083898	0.86[EUR][1000 genomes]
rs7086462	0.84[AFR][1000 genomes]
rs7089094	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7895305	0.83[ASN][1000 genomes]
rs7898330	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7913343	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7921721	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs912466	0.83[AFR][1000 genomes]
rs9420641	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9633699	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96184800-96199200	Weak transcription	Gastric	stomach
2	chr10:96188400-96213600	Weak transcription	Stomach Mucosa	stomach
3	chr10:96190800-96234600	Weak transcription	Osteobl	bone
4	chr10:96192000-96211400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:96192200-96199000	Weak transcription	HSMM	muscle
6	chr10:96195800-96199000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:96198200-96199400	Enhancers	Brain Substantia Nigra	brain
8	chr10:96198200-96199400	Enhancers	Pancreas	Pancrea
9	chr10:96198200-96199600	Enhancers	Left Ventricle	heart
10	chr10:96198400-96202800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr10:96198400-96218200	Weak transcription	Aorta	Aorta

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