Variant report

Variant	rs7089094
Chromosome Location	chr10:96194194-96194195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10786168	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10786169	0.81[EUR][1000 genomes]
rs1079504	0.82[EUR][1000 genomes]
rs10882452	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10882454	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10882460	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10882463	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10882469	0.85[EUR][1000 genomes]
rs10882471	0.86[EUR][1000 genomes]
rs10882473	0.86[EUR][1000 genomes]
rs10882474	0.82[EUR][1000 genomes]
rs10882477	0.82[EUR][1000 genomes]
rs11187937	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11187938	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11187939	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11187944	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11187948	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11187952	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11187958	0.81[EUR][1000 genomes]
rs11187966	0.82[EUR][1000 genomes]
rs11187972	0.91[EUR][1000 genomes]
rs11187973	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11187980	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11187996	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11188009	0.83[EUR][1000 genomes]
rs11188019	0.82[EUR][1000 genomes]
rs11527881	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11592354	0.87[EUR][1000 genomes]
rs12221475	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12572040	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12762574	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1749352	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1749355	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1749356	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1886272	0.82[EUR][1000 genomes]
rs1889485	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1889486	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1980741	0.92[EUR][1000 genomes]
rs2095380	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2244241	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2265362	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2265364	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2274096	0.82[EUR][1000 genomes]
rs2281791	0.83[EUR][1000 genomes]
rs2860760	0.81[EUR][1000 genomes]
rs2901764	0.80[EUR][1000 genomes]
rs2901765	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4351744	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4611135	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs479664	0.80[EUR][1000 genomes]
rs4917505	0.88[EUR][1000 genomes]
rs4918333	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4918402	0.81[EUR][1000 genomes]
rs4918404	0.81[EUR][1000 genomes]
rs493088	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs517784	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs522111	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs541704	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs542540	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs555782	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs556055	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56020662	0.82[EUR][1000 genomes]
rs576517	0.83[EUR][1000 genomes]
rs581165	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6583943	0.88[EUR][1000 genomes]
rs692872	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7073639	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7078236	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7079934	0.82[EUR][1000 genomes]
rs7083898	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7086462	0.81[EUR][1000 genomes]
rs7895305	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7898330	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7906843	0.82[EUR][1000 genomes]
rs7913343	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7921721	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8181426	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs912466	0.81[EUR][1000 genomes]
rs9420641	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs945123	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs955694	0.81[EUR][1000 genomes]
rs9633675	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9633699	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96171800-96198200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:96184800-96199200	Weak transcription	Gastric	stomach
3	chr10:96188400-96194800	Weak transcription	Brain Anterior Caudate	brain
4	chr10:96188400-96213600	Weak transcription	Stomach Mucosa	stomach
5	chr10:96188600-96194600	Weak transcription	Brain Angular Gyrus	brain
6	chr10:96188800-96194400	Weak transcription	Left Ventricle	heart
7	chr10:96190000-96198200	Weak transcription	Pancreas	Pancrea
8	chr10:96190400-96194600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:96190400-96194600	Weak transcription	Brain Substantia Nigra	brain
10	chr10:96190800-96195400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:96190800-96234600	Weak transcription	Osteobl	bone
12	chr10:96192000-96194600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr10:96192000-96211400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:96192200-96199000	Weak transcription	HSMM	muscle
15	chr10:96193200-96196600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:96193800-96194200	Enhancers	Brain Hippocampus Middle	brain

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