Variant report

Variant	rs7898330
Chromosome Location	chr10:96257736-96257737
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1079504	0.81[EUR][1000 genomes]
rs10882454	0.88[EUR][1000 genomes]
rs10882460	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10882463	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10882469	0.88[EUR][1000 genomes]
rs10882471	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10882473	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10882474	0.81[EUR][1000 genomes]
rs10882477	0.80[EUR][1000 genomes]
rs11187937	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11187939	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11187944	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11187948	0.87[AFR][1000 genomes]
rs11187952	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11187958	0.80[EUR][1000 genomes]
rs11187966	0.80[EUR][1000 genomes]
rs11187972	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11187973	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11187980	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11187985	0.84[AMR][1000 genomes]
rs11187996	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11188009	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11188019	0.81[EUR][1000 genomes]
rs11527881	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11592354	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12221475	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12572040	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12762574	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1749352	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1886272	0.83[EUR][1000 genomes]
rs1889485	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1889486	0.85[AFR][1000 genomes]
rs1977290	0.84[AFR][1000 genomes]
rs1980741	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2012670	0.82[AFR][1000 genomes]
rs2095380	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2265364	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2274096	0.80[EUR][1000 genomes]
rs2281791	0.85[EUR][1000 genomes]
rs2901764	0.81[EUR][1000 genomes]
rs2901765	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4316436	0.87[AFR][1000 genomes]
rs4351744	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4917505	0.87[EUR][1000 genomes]
rs4918333	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4918402	0.81[EUR][1000 genomes]
rs4918404	0.81[EUR][1000 genomes]
rs517784	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs556055	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56020662	0.80[EUR][1000 genomes]
rs6583943	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs692872	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7073639	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7078236	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7079934	0.81[EUR][1000 genomes]
rs7083898	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7086462	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7087472	0.84[AFR][1000 genomes]
rs7089094	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7393251	0.82[AMR][1000 genomes]
rs7906843	0.81[EUR][1000 genomes]
rs7913343	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7921721	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8181426	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs912466	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9420641	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs945123	0.81[EUR][1000 genomes]
rs955694	0.81[EUR][1000 genomes]
rs9633699	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1053747	chr10:96211618-96366396	Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96211600-96292200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:96219800-96283400	Weak transcription	Lung	lung
3	chr10:96223200-96293600	Weak transcription	NHDF-Ad	bronchial
4	chr10:96236400-96268600	Weak transcription	HSMMtube	muscle
5	chr10:96237600-96258800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr10:96237600-96271400	Weak transcription	Placenta	Placenta
7	chr10:96238200-96258400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr10:96238200-96273400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr10:96240200-96271000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr10:96244000-96262200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr10:96244000-96282600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr10:96244400-96258400	Weak transcription	Fetal Stomach	stomach
13	chr10:96244400-96283600	Weak transcription	Pancreas	Pancrea
14	chr10:96244400-96304600	Weak transcription	Aorta	Aorta
15	chr10:96245200-96267000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:96246800-96261400	Weak transcription	Fetal Intestine Large	intestine
17	chr10:96247400-96267400	Weak transcription	Fetal Muscle Leg	muscle
18	chr10:96248000-96273800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr10:96249000-96267800	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr10:96249200-96267400	Weak transcription	Left Ventricle	heart
21	chr10:96249200-96286200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr10:96249400-96268600	Weak transcription	Colon Smooth Muscle	Colon
23	chr10:96249400-96288600	Weak transcription	Gastric	stomach
24	chr10:96249600-96267800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:96250400-96281000	Weak transcription	Brain Cingulate Gyrus	brain
26	chr10:96250600-96261000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr10:96250600-96271400	Weak transcription	Stomach Smooth Muscle	stomach
28	chr10:96250800-96258800	Weak transcription	Fetal Lung	lung
29	chr10:96250800-96268600	Weak transcription	Brain Hippocampus Middle	brain
30	chr10:96250800-96281000	Weak transcription	Brain Angular Gyrus	brain
31	chr10:96250800-96294000	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr10:96250800-96297400	Weak transcription	Small Intestine	intestine
33	chr10:96251000-96258000	Weak transcription	Adipose Nuclei	Adipose
34	chr10:96251000-96271600	Weak transcription	Brain Substantia Nigra	brain
35	chr10:96251200-96267200	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr10:96251600-96260000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr10:96255600-96267400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr10:96255800-96258200	Weak transcription	Fetal Intestine Small	intestine
39	chr10:96256000-96267400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr10:96256000-96267600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr10:96256000-96268600	Weak transcription	Ovary	ovary
42	chr10:96256200-96271400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr10:96256200-96283600	Weak transcription	Osteobl	bone
44	chr10:96256400-96271400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr10:96256600-96259800	Weak transcription	Primary B cells from peripheral blood	blood
46	chr10:96256800-96258800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr10:96256800-96271000	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr10:96256800-96283800	Weak transcription	Liver	Liver
49	chr10:96257000-96293400	Weak transcription	HepG2	liver
50	chr10:96257200-96259600	Weak transcription	HSMM	muscle

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