Variant report

Variant	rs7393251
Chromosome Location	chr10:96225703-96225704
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10786169	0.89[YRI][hapmap]
rs1079504	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10882460	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10882463	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10882470	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11187939	0.80[EUR][1000 genomes]
rs11187944	0.80[EUR][1000 genomes]
rs11187948	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11187952	0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11187958	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11187966	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11187972	0.81[EUR][1000 genomes]
rs11187973	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11187980	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11188005	0.85[EUR][1000 genomes]
rs11188012	0.82[YRI][hapmap]
rs11188019	0.81[YRI][hapmap]
rs11188040	0.85[CEU][hapmap]
rs11527881	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12218213	0.85[CEU][hapmap]
rs12218216	0.85[CEU][hapmap]
rs12219906	0.85[CEU][hapmap]
rs12220588	0.85[CEU][hapmap]
rs12221475	0.81[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12573638	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs12762574	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1359263	0.85[CEU][hapmap]
rs1749355	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1749356	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1889485	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1889486	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1969815	0.90[CEU][hapmap]
rs1977290	0.81[EUR][1000 genomes]
rs1980741	0.82[EUR][1000 genomes]
rs2095380	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2148553	0.85[CEU][hapmap]
rs2244241	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2265362	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2274417	0.85[CEU][hapmap]
rs2860760	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2860821	0.85[CEU][hapmap]
rs2901764	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2901765	0.80[EUR][1000 genomes]
rs35774063	0.86[EUR][1000 genomes]
rs4316436	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4351744	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4611135	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs479664	0.86[EUR][1000 genomes]
rs4918333	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4918409	0.90[CEU][hapmap]
rs4918417	0.85[CEU][hapmap]
rs4918419	0.90[CEU][hapmap]
rs493088	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs517784	0.81[AMR][1000 genomes]
rs522111	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs541704	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs542540	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56020662	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs576517	0.88[EUR][1000 genomes]
rs581165	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6583944	0.90[CEU][hapmap]
rs7073639	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7078236	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7078811	0.88[YRI][hapmap]
rs7083898	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7086462	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7087472	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7898330	0.82[AMR][1000 genomes]
rs7906843	0.81[YRI][hapmap]
rs7906968	0.85[CEU][hapmap]
rs7913343	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs7921721	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs912466	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs945123	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs955694	0.95[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9633699	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv1053747	chr10:96211618-96366396	Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	esv3367964	chr10:96223813-96225875	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96190800-96234600	Weak transcription	Osteobl	bone
2	chr10:96203000-96239600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:96203400-96242800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:96204200-96243400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:96210200-96248800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:96211600-96292200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:96212600-96248600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr10:96213000-96234400	Weak transcription	HSMM	muscle
9	chr10:96215600-96255200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr10:96216600-96243600	Weak transcription	Brain Anterior Caudate	brain
11	chr10:96218800-96235000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr10:96219800-96235200	Weak transcription	Left Ventricle	heart
13	chr10:96219800-96239600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr10:96219800-96242800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:96219800-96283400	Weak transcription	Lung	lung
16	chr10:96220000-96227400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:96220000-96248800	Weak transcription	Colonic Mucosa	Colon
18	chr10:96220600-96234200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr10:96221800-96238000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr10:96221800-96255600	Weak transcription	Ovary	ovary
21	chr10:96222200-96237200	Weak transcription	Liver	Liver
22	chr10:96222800-96255800	Weak transcription	HepG2	liver
23	chr10:96223200-96293600	Weak transcription	NHDF-Ad	bronchial
24	chr10:96223400-96227400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr10:96223400-96231800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr10:96223400-96237600	Weak transcription	Fetal Intestine Small	intestine
27	chr10:96223400-96240200	Weak transcription	Brain Hippocampus Middle	brain
28	chr10:96223600-96237200	Weak transcription	Fetal Lung	lung
29	chr10:96223600-96242600	Weak transcription	Fetal Muscle Leg	muscle
30	chr10:96224000-96234600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr10:96224400-96237400	Weak transcription	Fetal Stomach	stomach

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