Variant report

Variant	rs11188005
Chromosome Location	chr10:96287036-96287037
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1079504	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10882469	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10882470	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10882471	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10882473	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11187948	0.84[EUR][1000 genomes]
rs11187958	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11187966	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11187972	0.86[AFR][1000 genomes]
rs11187996	0.80[EUR][1000 genomes]
rs11187998	0.80[ASN][1000 genomes]
rs11188015	0.82[EUR][1000 genomes]
rs11188016	0.83[EUR][1000 genomes]
rs11188017	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11188026	0.85[EUR][1000 genomes]
rs11188030	0.84[EUR][1000 genomes]
rs11188038	0.80[EUR][1000 genomes]
rs11592354	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12218213	0.81[EUR][1000 genomes]
rs12218216	0.81[EUR][1000 genomes]
rs12219906	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12220588	0.81[EUR][1000 genomes]
rs12572040	0.83[EUR][1000 genomes]
rs12573638	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1749355	0.86[EUR][1000 genomes]
rs1749356	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1854034	0.82[EUR][1000 genomes]
rs1886272	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1889486	0.86[EUR][1000 genomes]
rs1969815	0.83[EUR][1000 genomes]
rs1977290	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1980741	0.88[AFR][1000 genomes]
rs2012670	0.83[EUR][1000 genomes]
rs2244241	0.86[EUR][1000 genomes]
rs2265362	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2860760	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2860821	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2901764	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34814196	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35774063	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4316436	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4421688	0.84[EUR][1000 genomes]
rs4611135	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs479664	0.83[EUR][1000 genomes]
rs4918401	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4918403	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4918409	0.82[EUR][1000 genomes]
rs4918411	0.81[EUR][1000 genomes]
rs4918418	0.80[EUR][1000 genomes]
rs4918419	0.80[EUR][1000 genomes]
rs493088	0.82[EUR][1000 genomes]
rs522111	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs541704	0.86[EUR][1000 genomes]
rs542540	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56020662	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs576517	0.85[EUR][1000 genomes]
rs581165	0.86[EUR][1000 genomes]
rs6583944	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6583945	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7068337	0.82[EUR][1000 genomes]
rs7083898	0.81[EUR][1000 genomes]
rs7086462	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7087472	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7393251	0.85[EUR][1000 genomes]
rs912466	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs945123	0.88[EUR][1000 genomes]
rs955694	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1053747	chr10:96211618-96366396	Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96211600-96292200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:96223200-96293600	Weak transcription	NHDF-Ad	bronchial
3	chr10:96244400-96304600	Weak transcription	Aorta	Aorta
4	chr10:96249400-96288600	Weak transcription	Gastric	stomach
5	chr10:96250800-96294000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr10:96250800-96297400	Weak transcription	Small Intestine	intestine
7	chr10:96257000-96293400	Weak transcription	HepG2	liver
8	chr10:96261000-96304400	Weak transcription	NH-A	brain
9	chr10:96264200-96296800	Weak transcription	Brain Germinal Matrix	brain
10	chr10:96266000-96304600	Weak transcription	Fetal Kidney	kidney
11	chr10:96267400-96303800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:96268400-96304400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr10:96268800-96297200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:96268800-96304400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:96269600-96292000	Weak transcription	Brain Hippocampus Middle	brain
16	chr10:96270200-96304200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr10:96271800-96294000	Weak transcription	Psoas Muscle	Psoas
18	chr10:96271800-96304000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:96272000-96294000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr10:96272000-96304600	Weak transcription	HSMMtube	muscle
21	chr10:96272200-96295800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr10:96272400-96293000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:96272600-96293400	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr10:96273600-96294000	Weak transcription	Fetal Muscle Trunk	muscle
25	chr10:96274400-96304000	Weak transcription	Stomach Mucosa	stomach
26	chr10:96274400-96304400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr10:96274600-96290800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr10:96274600-96292400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr10:96274600-96304000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr10:96277000-96292400	Weak transcription	Primary B cells from peripheral blood	blood
31	chr10:96277200-96294000	Weak transcription	Left Ventricle	heart
32	chr10:96278400-96290800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr10:96279600-96297200	Weak transcription	Spleen	Spleen
34	chr10:96280400-96304800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr10:96281400-96294000	Weak transcription	Brain Angular Gyrus	brain
36	chr10:96281400-96294600	Weak transcription	Brain Cingulate Gyrus	brain
37	chr10:96281600-96293600	Weak transcription	Brain Anterior Caudate	brain
38	chr10:96281800-96296800	Weak transcription	Fetal Brain Female	brain
39	chr10:96282000-96293800	Weak transcription	Stomach Smooth Muscle	stomach
40	chr10:96282200-96304200	Weak transcription	Colonic Mucosa	Colon
41	chr10:96282400-96290600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr10:96284000-96293600	Weak transcription	Brain Substantia Nigra	brain
43	chr10:96284000-96304200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr10:96284000-96304400	Weak transcription	Osteobl	bone
45	chr10:96284200-96290400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr10:96284200-96290800	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr10:96284200-96292800	Weak transcription	Duodenum Mucosa	Duodenum
48	chr10:96284200-96294000	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr10:96284200-96297200	Weak transcription	Pancreas	Pancrea
50	chr10:96284200-96299200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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