Variant report

Variant	rs479664
Chromosome Location	chr10:96143144-96143145
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1079504	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10882454	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10882470	0.84[EUR][1000 genomes]
rs11187937	0.82[EUR][1000 genomes]
rs11187939	0.82[EUR][1000 genomes]
rs11187944	0.82[EUR][1000 genomes]
rs11187948	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11187958	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11187966	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11187972	0.81[EUR][1000 genomes]
rs11188005	0.83[EUR][1000 genomes]
rs12573638	0.86[EUR][1000 genomes]
rs1749352	0.81[EUR][1000 genomes]
rs1749355	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1749356	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1889486	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1889487	0.81[EUR][1000 genomes]
rs2244241	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2265362	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2265364	0.82[EUR][1000 genomes]
rs2860760	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2901764	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35774063	0.85[EUR][1000 genomes]
rs4316436	0.82[EUR][1000 genomes]
rs4611135	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs493088	0.89[EUR][1000 genomes]
rs517784	0.82[EUR][1000 genomes]
rs522111	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs541704	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs542540	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs556055	0.82[EUR][1000 genomes]
rs56020662	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs576517	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs581165	0.93[EUR][1000 genomes]
rs692872	0.81[EUR][1000 genomes]
rs7086462	0.87[EUR][1000 genomes]
rs7087472	0.83[EUR][1000 genomes]
rs7089094	0.80[EUR][1000 genomes]
rs7393251	0.86[EUR][1000 genomes]
rs7913343	0.82[EUR][1000 genomes]
rs912466	0.87[EUR][1000 genomes]
rs9420641	0.81[EUR][1000 genomes]
rs945123	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs955694	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	esv3398177	chr10:96139011-96169931	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	esv3411992	chr10:96139011-96172041	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96140600-96146000	Enhancers	Fetal Intestine Large	intestine
2	chr10:96142400-96144000	Weak transcription	Stomach Mucosa	stomach
3	chr10:96142800-96143400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:96143000-96143600	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr10:96143000-96145000	Enhancers	Monocytes-CD14+_RO01746	blood

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