Variant report

Variant	rs955694
Chromosome Location	chr10:96235725-96235726
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96229826..96232766-chr10:96233310..96236009,2	MCF-7	breast:
2	chr10:96234155..96237347-chr10:96237389..96239974,3	K562	blood:

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10786169	0.81[JPT][hapmap]
rs1079504	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10882454	0.84[EUR][1000 genomes]
rs10882460	0.85[EUR][1000 genomes]
rs10882463	0.85[EUR][1000 genomes]
rs10882469	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10882470	0.92[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10882471	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10882473	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11187937	0.82[EUR][1000 genomes]
rs11187939	0.83[EUR][1000 genomes]
rs11187944	0.83[EUR][1000 genomes]
rs11187948	0.92[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.92[EUR][1000 genomes]
rs11187952	0.83[EUR][1000 genomes]
rs11187958	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11187966	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11187972	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11187973	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11187980	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11187985	0.86[AMR][1000 genomes]
rs11187998	0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs11188005	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11188012	0.81[JPT][hapmap]
rs11188015	0.81[EUR][1000 genomes]
rs11188016	0.81[EUR][1000 genomes]
rs11188017	0.82[EUR][1000 genomes]
rs11188019	0.80[JPT][hapmap]
rs11188026	0.82[EUR][1000 genomes]
rs11188030	0.82[EUR][1000 genomes]
rs11188040	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11527881	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11592354	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11638	0.80[JPT][hapmap]
rs12218213	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs12218216	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs12219906	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs12220588	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs12221475	0.83[EUR][1000 genomes]
rs12573638	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12762574	0.85[EUR][1000 genomes]
rs1359263	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1749352	0.82[EUR][1000 genomes]
rs1749355	0.94[EUR][1000 genomes]
rs1749356	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1886272	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1889485	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1889486	0.92[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.94[EUR][1000 genomes]
rs1889487	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1931757	0.80[JPT][hapmap]
rs1969815	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs1977290	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1977291	0.80[JPT][hapmap]
rs1980741	0.81[JPT][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2095380	0.85[EUR][1000 genomes]
rs2148553	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2244241	0.94[EUR][1000 genomes]
rs2265362	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2265364	0.82[EUR][1000 genomes]
rs2274417	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2860760	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2860821	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs2901764	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2901765	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34814196	0.83[EUR][1000 genomes]
rs35774063	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4316436	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4351744	0.80[JPT][hapmap];0.85[EUR][1000 genomes]
rs4421688	0.82[EUR][1000 genomes]
rs4611135	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs479664	0.91[EUR][1000 genomes]
rs4917505	0.83[EUR][1000 genomes]
rs4918333	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4918401	0.81[EUR][1000 genomes]
rs4918403	0.83[EUR][1000 genomes]
rs4918409	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4918411	0.81[EUR][1000 genomes]
rs4918417	0.92[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap]
rs4918419	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs493088	0.92[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.90[EUR][1000 genomes]
rs517784	0.82[EUR][1000 genomes]
rs522111	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs541704	0.94[EUR][1000 genomes]
rs542540	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs556055	0.82[EUR][1000 genomes]
rs56020662	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs576517	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs581165	0.94[EUR][1000 genomes]
rs6583943	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6583944	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs6583945	0.82[EUR][1000 genomes]
rs692872	0.82[EUR][1000 genomes]
rs7073639	0.83[EUR][1000 genomes]
rs7078236	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7078478	0.80[JPT][hapmap]
rs7078811	0.80[JPT][hapmap]
rs7083898	0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7086462	0.92[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7087472	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7089094	0.81[EUR][1000 genomes]
rs7393251	0.95[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7898330	0.81[EUR][1000 genomes]
rs7906968	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7913343	0.83[EUR][1000 genomes]
rs7921721	0.80[JPT][hapmap];0.85[EUR][1000 genomes]
rs912466	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9420641	0.82[EUR][1000 genomes]
rs945123	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9633699	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1053747	chr10:96211618-96366396	Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96203000-96239600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr10:96203400-96242800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:96204200-96243400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:96210200-96248800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr10:96211600-96292200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:96212600-96248600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr10:96215600-96255200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr10:96216600-96243600	Weak transcription	Brain Anterior Caudate	brain
9	chr10:96219800-96239600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:96219800-96242800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:96219800-96283400	Weak transcription	Lung	lung
12	chr10:96220000-96248800	Weak transcription	Colonic Mucosa	Colon
13	chr10:96221800-96238000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr10:96221800-96255600	Weak transcription	Ovary	ovary
15	chr10:96222200-96237200	Weak transcription	Liver	Liver
16	chr10:96222800-96255800	Weak transcription	HepG2	liver
17	chr10:96223200-96293600	Weak transcription	NHDF-Ad	bronchial
18	chr10:96223400-96237600	Weak transcription	Fetal Intestine Small	intestine
19	chr10:96223400-96240200	Weak transcription	Brain Hippocampus Middle	brain
20	chr10:96223600-96237200	Weak transcription	Fetal Lung	lung
21	chr10:96223600-96242600	Weak transcription	Fetal Muscle Leg	muscle
22	chr10:96224400-96237400	Weak transcription	Fetal Stomach	stomach
23	chr10:96227800-96237200	Weak transcription	Small Intestine	intestine
24	chr10:96227800-96255600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:96228000-96237200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr10:96228000-96243200	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr10:96228600-96242200	Weak transcription	Brain Germinal Matrix	brain
28	chr10:96228600-96242400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr10:96230000-96243000	Weak transcription	Brain Substantia Nigra	brain
30	chr10:96230200-96242000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr10:96230400-96244000	Weak transcription	Pancreas	Pancrea
32	chr10:96230600-96237200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr10:96232200-96236000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:96232200-96237800	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr10:96232800-96237200	Weak transcription	Fetal Intestine Large	intestine
36	chr10:96233000-96236000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr10:96233400-96237200	Weak transcription	Adipose Nuclei	Adipose
38	chr10:96233600-96235800	Weak transcription	Hela-S3	cervix
39	chr10:96233600-96239800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr10:96234000-96243600	Weak transcription	Fetal Muscle Trunk	muscle
41	chr10:96234200-96236600	Weak transcription	Brain Angular Gyrus	brain
42	chr10:96234200-96237600	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr10:96234400-96238200	Strong transcription	HSMM	muscle
44	chr10:96234600-96239000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr10:96235000-96238200	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr10:96235000-96255200	Weak transcription	Osteobl	bone
47	chr10:96235200-96236000	Strong transcription	Left Ventricle	heart
48	chr10:96235200-96236400	Strong transcription	Placenta	Placenta
49	chr10:96235400-96237200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr10:96235600-96236400	Strong transcription	Primary monocytes fromperipheralblood	blood

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