Variant report

Variant	rs4611135
Chromosome Location	chr10:96184448-96184449
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96174854..96177531-chr10:96183896..96185905,2	MCF-7	breast:

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs1079504	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882454	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10882460	0.83[EUR][1000 genomes]
rs10882463	0.83[EUR][1000 genomes]
rs10882470	0.92[CEU][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10882471	0.81[AFR][1000 genomes]
rs10882473	0.80[EUR][1000 genomes]
rs11187937	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11187939	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11187944	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11187948	0.92[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11187952	0.82[EUR][1000 genomes]
rs11187958	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11187966	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11187972	1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11187973	0.84[EUR][1000 genomes]
rs11187980	0.82[EUR][1000 genomes]
rs11187998	1.00[JPT][hapmap];0.81[YRI][hapmap]
rs11188005	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11188017	0.81[EUR][1000 genomes]
rs11188026	0.81[EUR][1000 genomes]
rs11188030	0.80[EUR][1000 genomes]
rs11188040	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11527881	0.83[EUR][1000 genomes]
rs11592354	0.81[EUR][1000 genomes]
rs12218213	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12218216	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12219906	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs12220588	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12221475	0.83[EUR][1000 genomes]
rs12573638	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12762574	0.83[EUR][1000 genomes]
rs1359263	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1749352	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1749355	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1749356	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1889485	0.83[EUR][1000 genomes]
rs1889486	0.92[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1889487	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1969815	0.84[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1977290	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1980741	0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2095380	0.82[EUR][1000 genomes]
rs2148553	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2244241	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2265362	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2265364	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2274417	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2860760	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2860821	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2901764	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2901765	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34814196	0.82[EUR][1000 genomes]
rs35774063	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4316436	0.87[EUR][1000 genomes]
rs4351744	0.82[EUR][1000 genomes]
rs4421688	0.80[EUR][1000 genomes]
rs479664	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4917505	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4918333	0.82[EUR][1000 genomes]
rs4918403	0.82[EUR][1000 genomes]
rs4918409	0.84[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4918417	0.92[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap]
rs4918419	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs493088	0.92[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs517784	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs522111	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs541704	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs542540	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs556055	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56020662	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs576517	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs581165	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6583943	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6583944	0.84[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs6583945	0.81[EUR][1000 genomes]
rs692872	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7073639	0.82[EUR][1000 genomes]
rs7078236	0.82[EUR][1000 genomes]
rs7083898	0.82[EUR][1000 genomes]
rs7086462	0.92[CEU][hapmap];0.80[CHB][hapmap];0.89[JPT][hapmap];0.91[EUR][1000 genomes]
rs7087472	0.87[EUR][1000 genomes]
rs7089094	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7393251	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7906968	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7913343	0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7921721	0.82[EUR][1000 genomes]
rs912466	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9420641	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs945123	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs955694	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9633699	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	esv1815355	chr10:96162545-96189900	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	esv1817623	chr10:96162545-96189900	Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96164800-96188200	Weak transcription	Right Atrium	heart
2	chr10:96171600-96188200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:96171800-96198200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:96173400-96188400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:96173600-96190200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr10:96180800-96184600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:96181400-96187800	Weak transcription	Brain Substantia Nigra	brain
8	chr10:96182800-96186800	Weak transcription	Brain Hippocampus Middle	brain
9	chr10:96183000-96184600	Enhancers	HSMMtube	muscle
10	chr10:96183000-96191600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:96183200-96184800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:96183600-96188400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:96183800-96184600	Enhancers	Brain Cingulate Gyrus	brain
14	chr10:96183800-96184600	Enhancers	HSMM	muscle
15	chr10:96183800-96188200	Weak transcription	NH-A	brain
16	chr10:96184000-96184600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:96184200-96188200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr10:96184400-96184800	Enhancers	Gastric	stomach
19	chr10:96184400-96187800	Weak transcription	Osteobl	bone

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