Variant report

Variant	rs1854034
Chromosome Location	chr10:96349690-96349691
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1018602	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882470	0.82[EUR][1000 genomes]
rs10882481	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188005	0.82[EUR][1000 genomes]
rs11188015	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11188016	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11188017	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188026	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11188030	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188038	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188039	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11188040	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188041	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12218213	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12218216	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12219906	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12220588	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12570013	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12573638	0.84[EUR][1000 genomes]
rs1326838	0.91[AFR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1326839	0.81[EUR][1000 genomes]
rs1359263	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1854035	0.81[EUR][1000 genomes]
rs1969815	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1977290	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2012670	0.82[EUR][1000 genomes]
rs2148553	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2274417	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2860821	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34814196	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35774063	0.83[EUR][1000 genomes]
rs3758523	0.81[EUR][1000 genomes]
rs3781262	0.82[EUR][1000 genomes]
rs4316436	0.82[EUR][1000 genomes]
rs4421688	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4918401	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4918403	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4918409	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4918411	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4918417	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4918418	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4918419	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6583944	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6583945	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6583946	0.82[EUR][1000 genomes]
rs68046102	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7068337	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7086462	0.81[EUR][1000 genomes]
rs7087472	0.81[EUR][1000 genomes]
rs7906968	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs912466	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1053747	chr10:96211618-96366396	Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv517681	chr10:96343228-96387079	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96306400-96357200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr10:96306400-96365600	Weak transcription	Esophagus	oesophagus
3	chr10:96306400-96370400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:96306400-96370600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:96306400-96371000	Weak transcription	Ovary	ovary
6	chr10:96306600-96349800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr10:96306600-96353800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr10:96306600-96379200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:96306800-96349800	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr10:96306800-96357200	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr10:96306800-96373000	Weak transcription	Primary T cells from cord blood	blood
12	chr10:96307000-96358200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:96307000-96375000	Weak transcription	Osteobl	bone
14	chr10:96307200-96371200	Weak transcription	Fetal Brain Male	brain
15	chr10:96307600-96356000	Weak transcription	NHDF-Ad	bronchial
16	chr10:96307600-96373200	Weak transcription	Brain Germinal Matrix	brain
17	chr10:96307800-96373000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr10:96308000-96373200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:96309400-96354000	Weak transcription	K562	blood
20	chr10:96309600-96372800	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr10:96309600-96377000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr10:96312200-96354000	Weak transcription	Gastric	stomach
23	chr10:96312800-96372200	Strong transcription	Dnd41	blood
24	chr10:96314200-96373400	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr10:96315000-96369200	Weak transcription	Fetal Kidney	kidney
26	chr10:96316000-96371400	Weak transcription	Fetal Brain Female	brain
27	chr10:96316000-96374000	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr10:96316200-96357600	Weak transcription	Duodenum Mucosa	Duodenum
29	chr10:96316200-96373000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr10:96317000-96372600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr10:96321000-96353200	Weak transcription	Fetal Intestine Large	intestine
32	chr10:96324000-96356600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr10:96324000-96376600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr10:96324200-96353800	Weak transcription	Primary B cells from peripheral blood	blood
35	chr10:96324200-96365600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr10:96325800-96376000	Weak transcription	NHLF	lung
37	chr10:96331000-96377400	Weak transcription	Placenta	Placenta
38	chr10:96331200-96361800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr10:96332400-96359200	Weak transcription	Left Ventricle	heart
40	chr10:96332600-96350000	Weak transcription	Primary hematopoietic stem cells	blood
41	chr10:96333400-96352000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr10:96335400-96357200	Weak transcription	Small Intestine	intestine
43	chr10:96337400-96350200	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr10:96338800-96354400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr10:96338800-96372000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr10:96339600-96353200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr10:96339600-96353600	Weak transcription	Fetal Intestine Small	intestine
48	chr10:96339800-96350400	Weak transcription	GM12878-XiMat	blood
49	chr10:96341000-96352800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr10:96344200-96351200	Weak transcription	HepG2	liver

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