Variant report

Variant	rs7100415
Chromosome Location	chr10:96376189-96376190
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96372045..96374578-chr10:96375637..96378833,3	K562	blood:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1018602	0.84[EUR][1000 genomes]
rs10786168	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10786169	1.00[CEU][hapmap];0.84[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10786170	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10882460	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs10882463	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs10882474	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882481	0.81[EUR][1000 genomes]
rs10882486	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11187939	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11187940	0.93[JPT][hapmap]
rs11187944	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11187952	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs11187960	1.00[JPT][hapmap]
rs11187972	0.95[CEU][hapmap]
rs11187973	0.85[ASN][1000 genomes]
rs11187980	1.00[CEU][hapmap]
rs11188009	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11188012	0.84[JPT][hapmap]
rs11188019	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11188020	1.00[JPT][hapmap]
rs11188038	0.82[EUR][1000 genomes]
rs11188039	0.81[EUR][1000 genomes]
rs11188040	0.81[EUR][1000 genomes]
rs11188041	0.81[EUR][1000 genomes]
rs11638	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12221475	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs12570013	0.86[EUR][1000 genomes]
rs12572040	0.80[EUR][1000 genomes]
rs1326839	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1334595	1.00[JPT][hapmap]
rs1359262	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1359263	0.82[EUR][1000 genomes]
rs1409655	1.00[JPT][hapmap]
rs1854035	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1889485	0.85[ASN][1000 genomes]
rs1931757	0.83[JPT][hapmap]
rs1969815	0.85[CEU][hapmap]
rs1977288	1.00[JPT][hapmap]
rs1977291	0.83[JPT][hapmap]
rs1980741	1.00[CEU][hapmap];0.84[JPT][hapmap]
rs2148553	0.81[EUR][1000 genomes]
rs2274096	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2274417	0.81[EUR][1000 genomes]
rs2281791	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2860840	1.00[JPT][hapmap]
rs3740358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3758522	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3758523	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3781262	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4351744	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs4494250	0.94[JPT][hapmap]
rs4918333	0.80[ASN][1000 genomes]
rs4918402	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4918404	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4918409	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs4918412	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4918417	0.81[EUR][1000 genomes]
rs4918418	0.82[EUR][1000 genomes]
rs4918419	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs6583942	1.00[JPT][hapmap]
rs6583944	0.85[CEU][hapmap]
rs6583946	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs68046102	0.81[EUR][1000 genomes]
rs701885	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7068337	0.81[EUR][1000 genomes]
rs7075182	0.89[JPT][hapmap]
rs7078478	0.83[JPT][hapmap]
rs7078811	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7079934	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7083898	1.00[CEU][hapmap];0.84[JPT][hapmap]
rs7087798	0.83[JPT][hapmap]
rs7092129	1.00[JPT][hapmap]
rs7906843	0.96[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7906968	0.81[EUR][1000 genomes]
rs7913343	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs7921721	1.00[CEU][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv517681	chr10:96343228-96387079	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96306600-96379200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:96309600-96377000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:96324000-96376600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:96331000-96377400	Weak transcription	Placenta	Placenta
5	chr10:96354800-96376600	Weak transcription	Fetal Intestine Large	intestine
6	chr10:96357000-96376200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr10:96358400-96377200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr10:96359200-96382000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr10:96363200-96376200	Weak transcription	HSMM	muscle
10	chr10:96366200-96376800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:96369800-96377200	Weak transcription	HMEC	breast
12	chr10:96370000-96377000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr10:96370000-96377000	Weak transcription	Hela-S3	cervix
14	chr10:96370000-96377200	Weak transcription	Fetal Lung	lung
15	chr10:96370000-96382800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:96370200-96382000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr10:96370400-96376200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:96370600-96382000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr10:96370600-96382000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr10:96371800-96376800	Weak transcription	Fetal Thymus	thymus
21	chr10:96372000-96377400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:96372200-96377000	Weak transcription	Dnd41	blood
23	chr10:96372400-96380000	Weak transcription	A549	lung
24	chr10:96372600-96382000	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr10:96372600-96382200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr10:96372600-96382400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr10:96372800-96377200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr10:96372800-96382000	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr10:96373000-96381600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr10:96373200-96382400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:96373200-96383800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr10:96374000-96377000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr10:96374000-96382200	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr10:96374600-96382000	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr10:96374600-96386200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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