Variant report

Variant	rs11188325
Chromosome Location	chr10:97217076-97217077
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97196672..97199755-chr10:97214969..97217951,3	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10882591	0.96[CHD][hapmap];0.92[JPT][hapmap];0.83[MEX][hapmap];0.83[AMR][1000 genomes]
rs11188326	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17110767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583999	1.00[YRI][hapmap]
rs72824506	0.84[ASN][1000 genomes]
rs7902266	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045002	chr10:97214418-97250630	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97206000-97220000	Enhancers	Rectal Smooth Muscle	rectum
2	chr10:97206200-97219000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:97208200-97219000	Weak transcription	Ovary	ovary
4	chr10:97208200-97219000	Weak transcription	HSMMtube	muscle
5	chr10:97209200-97219200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr10:97210000-97219400	Enhancers	Colon Smooth Muscle	Colon
7	chr10:97211200-97217400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:97211400-97219000	Weak transcription	Brain Angular Gyrus	brain
9	chr10:97211400-97219000	Weak transcription	Brain Germinal Matrix	brain
10	chr10:97211800-97219000	Weak transcription	Fetal Muscle Leg	muscle
11	chr10:97212200-97219000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr10:97212800-97217400	Weak transcription	Right Atrium	heart
13	chr10:97213000-97217200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:97213200-97234200	Weak transcription	Colonic Mucosa	Colon
15	chr10:97213600-97219000	Weak transcription	Psoas Muscle	Psoas
16	chr10:97213800-97219800	Enhancers	Brain Anterior Caudate	brain
17	chr10:97213800-97219800	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr10:97214200-97219000	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr10:97214400-97219000	Enhancers	Fetal Heart	heart
20	chr10:97214600-97219000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:97215200-97219600	Enhancers	Fetal Brain Male	brain
22	chr10:97215400-97218000	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr10:97215400-97219800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr10:97215400-97219800	Enhancers	Fetal Brain Female	brain
25	chr10:97215600-97217200	Enhancers	Right Ventricle	heart
26	chr10:97215600-97219800	Enhancers	Liver	Liver
27	chr10:97215800-97218000	Enhancers	Fetal Intestine Large	intestine
28	chr10:97215800-97218000	Enhancers	Fetal Intestine Small	intestine
29	chr10:97215800-97219000	Enhancers	Fetal Lung	lung
30	chr10:97215800-97219200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr10:97216000-97218400	Enhancers	Brain Cingulate Gyrus	brain
32	chr10:97216000-97223000	Weak transcription	Pancreas	Pancrea
33	chr10:97216000-97226800	Weak transcription	Duodenum Mucosa	Duodenum
34	chr10:97216000-97228200	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr10:97216200-97217600	Enhancers	Placenta	Placenta
36	chr10:97216200-97217600	Genic enhancers	Left Ventricle	heart
37	chr10:97216200-97218000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr10:97216200-97219000	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr10:97216200-97219400	Enhancers	Fetal Stomach	stomach
40	chr10:97216200-97220000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr10:97216400-97217800	Enhancers	Stomach Smooth Muscle	stomach
42	chr10:97216400-97219000	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr10:97216400-97219000	Weak transcription	Lung	lung
44	chr10:97216600-97217400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr10:97216600-97217400	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr10:97216600-97218000	Enhancers	Brain Hippocampus Middle	brain
47	chr10:97216600-97218000	Flanking Active TSS	HepG2	liver
48	chr10:97216800-97217200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr10:97216800-97218000	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr10:97216800-97218400	Enhancers	Brain Substantia Nigra	brain

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