Variant report

Variant	rs11188437
Chromosome Location	chr10:97454889-97454890
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10509686	0.81[EUR][1000 genomes]
rs10882644	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10882649	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10882650	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11188394	0.84[AMR][1000 genomes]
rs11188407	0.82[EUR][1000 genomes]
rs11188411	0.82[EUR][1000 genomes]
rs11188417	0.83[EUR][1000 genomes]
rs11188444	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11188455	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11188464	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11188484	0.82[EUR][1000 genomes]
rs11188489	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11592213	0.82[EUR][1000 genomes]
rs11593044	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11593761	0.82[EUR][1000 genomes]
rs11597321	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12357173	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12358481	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12359272	0.82[AMR][1000 genomes]
rs12359366	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17461546	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17462179	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17553401	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1891535	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2152916	0.82[EUR][1000 genomes]
rs2861151	0.81[EUR][1000 genomes]
rs3176895	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3763707	0.84[EUR][1000 genomes]
rs4258314	0.83[EUR][1000 genomes]
rs4320886	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4417206	0.82[EUR][1000 genomes]
rs4463786	0.82[EUR][1000 genomes]
rs4568937	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4917697	0.84[EUR][1000 genomes]
rs4918951	0.83[EUR][1000 genomes]
rs4918955	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4918966	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4918970	0.81[EUR][1000 genomes]
rs4918972	0.81[EUR][1000 genomes]
rs55801606	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56322409	0.82[EUR][1000 genomes]
rs61869573	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61869591	0.82[EUR][1000 genomes]
rs61871790	0.82[EUR][1000 genomes]
rs61871792	0.82[EUR][1000 genomes]
rs61871793	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61871796	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6946	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7072953	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7073010	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7918339	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11188437	ENTPD1	Cis_1M	lymphoblastoid	RTeQTL
rs11188437	ALDH18A1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97454200-97455000	Enhancers	Primary B cells from peripheral blood	blood
2	chr10:97454400-97455200	Enhancers	Primary B cells from cord blood	blood
3	chr10:97454400-97457200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:97454600-97456000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr10:97454600-97456200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr10:97454600-97456400	Weak transcription	GM12878-XiMat	blood
7	chr10:97454600-97457200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr10:97454800-97456200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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