Variant report

Variant	rs4917697
Chromosome Location	chr10:97414090-97414091
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97408175..97410101-chr10:97411776..97414695,3	MCF-7	breast:
2	chr10:97411958..97414556-chr10:97414784..97416588,2	MCF-7	breast:
3	chr10:97403144..97405110-chr10:97412566..97414217,2	K562	blood:

Variant related genes	Relation type
ENSG00000059573	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10882643	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882644	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882649	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10882650	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11188393	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11188394	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188396	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188398	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188400	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188404	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188406	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188407	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188411	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188437	0.84[EUR][1000 genomes]
rs11188444	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11188455	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11188464	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11591779	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592213	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11593044	0.86[AMR][1000 genomes]
rs11597321	0.86[AMR][1000 genomes]
rs12357173	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12358481	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12359272	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12359366	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17461546	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17462179	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17553401	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2004611	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2017218	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2152916	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2296691	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3176895	0.86[AMR][1000 genomes]
rs3763707	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4037	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4258314	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4320886	0.84[AMR][1000 genomes]
rs4417206	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4568937	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4918951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918955	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4918966	0.86[AMR][1000 genomes]
rs55801606	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56322409	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57347444	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61869573	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61871790	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61871792	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61871793	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61871796	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6946	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7072953	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7073010	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs749050	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917792	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918339	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8758	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97376400-97415200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:97376600-97415000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr10:97378600-97414200	Weak transcription	Fetal Heart	heart
4	chr10:97401000-97415200	Weak transcription	Colon Smooth Muscle	Colon
5	chr10:97402200-97415200	Weak transcription	Right Ventricle	heart
6	chr10:97402800-97415200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr10:97403000-97414400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr10:97403000-97415400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:97404800-97415200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr10:97406400-97415200	Weak transcription	Brain Angular Gyrus	brain
11	chr10:97407600-97414200	Weak transcription	Stomach Mucosa	stomach
12	chr10:97407800-97415400	Weak transcription	Small Intestine	intestine
13	chr10:97409000-97415200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr10:97411400-97415200	Weak transcription	Lung	lung
15	chr10:97411600-97415400	Weak transcription	Esophagus	oesophagus
16	chr10:97411600-97415400	Weak transcription	Psoas Muscle	Psoas
17	chr10:97411600-97415600	Weak transcription	Thymus	Thymus
18	chr10:97411600-97415600	Weak transcription	Spleen	Spleen
19	chr10:97411800-97414400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr10:97411800-97414600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr10:97411800-97414600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr10:97411800-97415000	Weak transcription	Colonic Mucosa	Colon
23	chr10:97411800-97415000	Weak transcription	Fetal Lung	lung
24	chr10:97411800-97415200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr10:97411800-97415200	Weak transcription	Brain Hippocampus Middle	brain
26	chr10:97411800-97415200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr10:97411800-97415200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr10:97411800-97415400	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr10:97411800-97415400	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr10:97412000-97414400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr10:97412000-97414400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr10:97412000-97414600	Weak transcription	NHDF-Ad	bronchial
33	chr10:97412000-97415000	Weak transcription	Fetal Kidney	kidney
34	chr10:97412000-97415000	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr10:97412000-97415200	Weak transcription	Brain Anterior Caudate	brain
36	chr10:97412000-97415400	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr10:97412000-97415600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr10:97412200-97414200	Weak transcription	Fetal Brain Male	brain
39	chr10:97412200-97414600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr10:97412200-97415000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr10:97412200-97415000	Weak transcription	A549	lung
42	chr10:97412200-97415200	Weak transcription	Primary hematopoietic stem cells	blood
43	chr10:97412200-97415400	Weak transcription	Fetal Thymus	thymus
44	chr10:97412400-97414200	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr10:97412600-97414600	Weak transcription	Primary B cells from peripheral blood	blood
46	chr10:97412600-97415000	Weak transcription	Brain Germinal Matrix	brain
47	chr10:97412600-97415200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr10:97412600-97415200	Weak transcription	Fetal Brain Female	brain
49	chr10:97412600-97415400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr10:97412800-97414400	Weak transcription	Primary T helper cells fromperipheralblood	blood

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