Variant report

Variant	rs11188570
Chromosome Location	chr10:97802640-97802641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr10:97802541-97803653	A549	lung:	n/a	n/a
2	REST	chr10:97802490-97804714	H1-neurons	neurons:	n/a	chr10:97803739-97803752 chr10:97802850-97802863 chr10:97803828-97803841
3	MYC	chr10:97802589-97804207	K562	blood:	n/a	chr10:97803523-97803532
4	MAX	chr10:97802584-97804339	A549	lung:	n/a	chr10:97803523-97803532
5	HCFC1	chr10:97802333-97804425	Hela-S3	cervix:	n/a	n/a
6	CBX3	chr10:97802617-97803691	HCT-116	colon:	n/a	n/a
7	MAX	chr10:97802620-97804324	H1-hESC	embryonic stem cell:	n/a	chr10:97803523-97803532
8	MTA3	chr10:97802472-97804759	GM12878	blood:	n/a	n/a
9	MAX	chr10:97802508-97804478	ECC-1	luminal epithelium:	n/a	chr10:97803523-97803532
10	POLR2A	chr10:97802528-97804861	H1-hESC	embryonic stem cell:	n/a	n/a
11	MAX	chr10:97802616-97804191	HepG2	liver:	n/a	chr10:97803523-97803532
12	MAX	chr10:97802598-97804199	A549	lung:	n/a	chr10:97803523-97803532
13	POLR2A	chr10:97802623-97804402	HepG2	liver:	n/a	n/a
14	E2F6	chr10:97802510-97804066	A549	lung:	n/a	chr10:97803186-97803195 chr10:97803758-97803770
15	PML	chr10:97802565-97804443	GM12878	blood:	n/a	n/a
16	E2F6	chr10:97802468-97804293	H1-hESC	embryonic stem cell:	n/a	chr10:97803186-97803195 chr10:97803758-97803770
17	MAX	chr10:97802579-97803891	HCT-116	colon:	n/a	chr10:97803523-97803532

No.	Distal block	Cell Line	Cell type
1	chr10:97798897..97807548-chr10:97886918..97893342,17	K562	blood:
2	chr10:97665969..97667709-chr10:97802060..97805145,4	MCF-7	breast:
3	chr10:97798897..97809644-chr10:97883865..97893202,24	K562	blood:
4	chr10:97802278..97809202-chr10:97887978..97892462,12	MCF-7	breast:
5	chr10:97800624..97806520-chr10:97847575..97852414,10	K562	blood:
6	chr10:97802232..97804620-chr10:97847329..97851017,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TCTN3-1	chr10:97802235-97802684	ENSG00000226688.1

Variant related genes	Relation type
CCNJ	TF binding region
ENTPD1-AS1	TF binding region
ENSG00000173088	Chromatin interaction
ENSG00000177853	Chromatin interaction
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3372441	chr10:97802187-97804735	Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97799000-97802800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:97799800-97802800	Weak transcription	Esophagus	oesophagus
3	chr10:97801600-97802800	Weak transcription	Placenta	Placenta
4	chr10:97802000-97802800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr10:97802200-97802800	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr10:97802200-97802800	Enhancers	K562	blood
7	chr10:97802200-97803000	Flanking Active TSS	Dnd41	blood
8	chr10:97802400-97802800	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr10:97802400-97802800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:97802400-97802800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
11	chr10:97802400-97802800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
12	chr10:97802400-97802800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
13	chr10:97802400-97802800	Enhancers	Primary B cells from peripheral blood	blood
14	chr10:97802400-97802800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:97802400-97802800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
16	chr10:97802400-97802800	Flanking Active TSS	Brain Hippocampus Middle	brain
17	chr10:97802400-97802800	Enhancers	Fetal Intestine Large	intestine
18	chr10:97802400-97802800	Enhancers	Fetal Thymus	thymus
19	chr10:97802400-97802800	Enhancers	HUVEC	blood vessel
20	chr10:97802400-97802800	Enhancers	NHDF-Ad	bronchial
21	chr10:97802400-97803000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
22	chr10:97802400-97803000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
23	chr10:97802400-97803000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
24	chr10:97802400-97803000	Flanking Active TSS	Fetal Lung	lung
25	chr10:97802400-97803000	Flanking Active TSS	GM12878-XiMat	blood
26	chr10:97802400-97803200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
27	chr10:97802400-97804200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr10:97802400-97804200	Active TSS	Brain Anterior Caudate	brain
29	chr10:97802400-97804400	Active TSS	Duodenum Smooth Muscle	Duodenum
30	chr10:97802600-97802800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
31	chr10:97802600-97802800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr10:97802600-97802800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
33	chr10:97802600-97802800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
34	chr10:97802600-97802800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
35	chr10:97802600-97802800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr10:97802600-97802800	Active TSS	Primary hematopoietic stem cells short term culture	blood
37	chr10:97802600-97802800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr10:97802600-97802800	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr10:97802600-97802800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr10:97802600-97802800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr10:97802600-97802800	Enhancers	Liver	Liver
42	chr10:97802600-97802800	Enhancers	Duodenum Mucosa	Duodenum
43	chr10:97802600-97802800	Flanking Active TSS	Fetal Intestine Small	intestine
44	chr10:97802600-97802800	Enhancers	Placenta Amnion	Placenta Amnion
45	chr10:97802600-97802800	Enhancers	Right Ventricle	heart
46	chr10:97802600-97802800	Enhancers	Small Intestine	intestine
47	chr10:97802600-97802800	Enhancers	HMEC	breast
48	chr10:97802600-97802800	Enhancers	NHLF	lung
49	chr10:97802600-97803000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr10:97802600-97803000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links