Variant report

Variant	esv3372441
Chromosome Location	chr10:97802187-97804735
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr10:97804683-97804927	K562	blood:	n/a	n/a
2	BACH1	chr10:97802986-97803397	H1-hESC	embryonic stem cell:	n/a	n/a
3	BACH1	chr10:97804335-97804342	K562	blood:	n/a	n/a
4	BCLAF1	chr10:97802801-97804116	GM12878	blood:	n/a	chr10:97803177-97803190 chr10:97803183-97803192 chr10:97803496-97803509 chr10:97803188-97803197 chr10:97803497-97803510 chr10:97803189-97803202
5	BHLHE40	chr10:97804321-97804485	A549	lung:	n/a	n/a
6	BHLHE40	chr10:97803058-97803709	K562	blood:	n/a	chr10:97803204-97803220 chr10:97803190-97803206
7	BHLHE40	chr10:97802961-97803650	GM12878	blood:	n/a	chr10:97803204-97803220 chr10:97803190-97803206
8	BRCA1	chr10:97802810-97803481	H1-hESC	embryonic stem cell:	n/a	chr10:97803258-97803267
9	BRCA1	chr10:97803071-97803460	HepG2	liver:	n/a	chr10:97803258-97803267
10	BRCA1	chr10:97803074-97803478	Hela-S3	cervix:	n/a	chr10:97803258-97803267
11	BRCA1	chr10:97802910-97803454	GM12878	blood:	n/a	chr10:97803258-97803267
12	CBX3	chr10:97802617-97803691	HCT-116	colon:	n/a	n/a
13	CBX3	chr10:97802762-97803448	K562	blood:	n/a	n/a
14	CCNT2	chr10:97802862-97804251	K562	blood:	n/a	n/a
15	CEBPB	chr10:97804524-97804900	K562	blood:	n/a	n/a
16	CEBPB	chr10:97803236-97803416	H1-hESC	embryonic stem cell:	n/a	n/a
17	CEBPB	chr10:97804505-97804926	IMR90	lung:	n/a	n/a
18	CEBPB	chr10:97804559-97804851	HepG2	liver:	n/a	n/a
19	CEBPB	chr10:97803040-97803647	Hela-S3	cervix:	n/a	n/a
20	CEBPB	chr10:97803781-97804270	IMR90	lung:	n/a	n/a
21	CEBPB	chr10:97804504-97804896	Hela-S3	cervix:	n/a	n/a
22	CEBPB	chr10:97804542-97804877	K562	blood:	n/a	n/a
23	CEBPB	chr10:97804557-97804853	A549	lung:	n/a	n/a
24	CEBPD	chr10:97803020-97803586	HepG2	liver:	n/a	n/a
25	CEBPD	chr10:97804515-97804976	K562	blood:	n/a	chr10:97804711-97804722
26	CHD1	chr10:97802643-97804072	GM12878	blood:	n/a	chr10:97803258-97803267 chr10:97803175-97803185
27	CHD1	chr10:97803387-97804297	H1-hESC	embryonic stem cell:	n/a	chr10:97804068-97804078
28	CHD1	chr10:97804575-97805012	H1-hESC	embryonic stem cell:	n/a	n/a
29	CHD2	chr10:97802940-97803942	GM12878	blood:	n/a	chr10:97803258-97803267 chr10:97803175-97803185
30	CHD2	chr10:97802815-97804013	H1-hESC	embryonic stem cell:	n/a	chr10:97803258-97803267 chr10:97803175-97803185
31	CHD2	chr10:97802869-97803677	K562	blood:	n/a	chr10:97803258-97803267 chr10:97803175-97803185
32	CHD2	chr10:97802910-97804378	Hela-S3	cervix:	n/a	chr10:97803258-97803267 chr10:97803175-97803185 chr10:97804068-97804078
33	CHD2	chr10:97802901-97804191	HepG2	liver:	n/a	chr10:97803258-97803267 chr10:97803175-97803185 chr10:97804068-97804078
34	CREB1	chr10:97802962-97804268	GM12878	blood:	n/a	n/a
35	CREB1	chr10:97802778-97803470	H1-hESC	embryonic stem cell:	n/a	n/a
36	CREB1	chr10:97802940-97803622	A549	lung:	n/a	n/a
37	CREB1	chr10:97802738-97803389	H1-hESC	embryonic stem cell:	n/a	n/a
38	CREB1	chr10:97803849-97804358	H1-hESC	embryonic stem cell:	n/a	n/a
39	CTCF	chr10:97803200-97803350	AG09309	skin:	n/a	chr10:97803320-97803333
40	CTCF	chr10:97803240-97803390	NHLF	lung:	n/a	chr10:97803320-97803333
41	CTCF	chr10:97803040-97803190	HepG2	liver:	n/a	chr10:97803087-97803100
42	CTCF	chr10:97803140-97803290	GM12873	blood:	n/a	chr10:97803191-97803204
43	CTCF	chr10:97803320-97803470	GM12874	blood:	n/a	chr10:97803320-97803333
44	CTCF	chr10:97803280-97803430	AG04449	skin:	n/a	chr10:97803320-97803333
45	CTCF	chr10:97803239-97803366	GM10248	blood:	n/a	chr10:97803320-97803333
46	CTCF	chr10:97803420-97803570	HAc	cerebellar:	n/a	n/a
47	CTCF	chr10:97803240-97803390	HCFaa	heart:	n/a	chr10:97803320-97803333
48	CTCF	chr10:97803047-97803549	K562	blood:	n/a	chr10:97803087-97803100 chr10:97803191-97803204 chr10:97803320-97803333
49	CTCF	chr10:97803260-97803410	AG10803	skin:	n/a	chr10:97803320-97803333
50	CTCF	chr10:97803180-97803330	WERI-Rb-1	eye:	n/a	chr10:97803191-97803204

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:97802849-97802899	HL-60	blood:	n/a
2	chr10:97804137-97804187	NH-A	brain:	n/a
3	chr10:97802966-97803016	MCF-7	breast:	n/a
4	chr10:97802977-97803027	HCM	heart:	n/a
5	chr10:97802849-97802899	HL-60	blood:	n/a
6	chr10:97804137-97804187	NH-A	brain:	n/a
7	chr10:97802966-97803016	MCF-7	breast:	n/a
8	chr10:97802977-97803027	HCM	heart:	n/a
9	chr10:97802966-97803016	BJ	skin:	n/a
10	chr10:97802912-97802962	AoSMC	blood vessel:	n/a
11	chr10:97802966-97803016	AG04450	lung:	fetal
12	chr10:97804045-97804095	HCM	heart:	n/a
13	chr10:97802966-97803016	MCF10A-Er-Src	breast:	n/a
14	chr10:97802977-97803027	HCF	heart:	n/a
15	chr10:97802977-97803027	HRPEpiC	eye:	n/a
16	chr10:97804280-97804330	LNCaP	prostate:	n/a
17	chr10:97802912-97802962	CMK	blood:	n/a
18	chr10:97803045-97803095	ovcar-3	ovarian:	n/a
19	chr10:97803058-97803108	GM19239	blood:	n/a
20	chr10:97803058-97803108	HCPEpiC	choroid plexus:	n/a
21	chr10:97803045-97803095	ECC-1	luminal epithelium:	n/a
22	chr10:97803386-97803436	HIPEpiC	eye:	n/a
23	chr10:97803058-97803108	HRPEpiC	eye:	n/a
24	chr10:97804045-97804095	BJ	skin:	n/a
25	chr10:97802977-97803027	SAEC	small airway:	n/a
26	chr10:97802928-97802978	U87	brain:	n/a
27	chr10:97803386-97803436	AG10803	skin:	n/a
28	chr10:97802912-97802962	AG04449	skin:	fetal
29	chr10:97802912-97802962	HCT-116	colon:	n/a
30	chr10:97803058-97803108	NB4	blood:	n/a
31	chr10:97804280-97804330	CMK	blood:	n/a
32	chr10:97804280-97804330	PrEC	prostate:	n/a
33	chr10:97803525-97803575	CMK	blood:	n/a
34	chr10:97802912-97802962	HRPEpiC	eye:	n/a
35	chr10:97802849-97802899	NB4	blood:	n/a
36	chr10:97802912-97802962	HAEpiC	amniotic membrane:	n/a
37	chr10:97803045-97803095	AG09309	skin:	n/a
38	chr10:97802928-97802978	GM12878	blood:	n/a
39	chr10:97802912-97802962	BJ	skin:	n/a
40	chr10:97802977-97803027	HCT-116	colon:	n/a
41	chr10:97802959-97803009	NHBE	bronchial:	n/a
42	chr10:97802849-97802899	NH-A	brain:	n/a
43	chr10:97803048-97803098	AoSMC	blood vessel:	n/a
44	chr10:97804045-97804095	HPAEpiC	pulmonary alveolar:	n/a
45	chr10:97804137-97804187	U87	brain:	n/a
46	chr10:97802959-97803009	Hela-S3	cervix:	n/a
47	chr10:97802966-97803016	NB4	blood:	n/a
48	chr10:97804045-97804095	NHBE	bronchial:	n/a
49	chr10:97802928-97802978	PrEC	prostate:	n/a
50	chr10:97802966-97803016	HRCEpiC	kidney:	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:97802832..97806993-chr10:97887536..97891956,8	MCF-7	breast:
2	chr10:97803734..97806722-chr10:97959272..97960926,2	K562	blood:
3	chr10:97665969..97667709-chr10:97802060..97805145,4	MCF-7	breast:
4	chr10:97803632..97805225-chr10:97927626..97930343,2	K562	blood:
5	chr10:97798897..97809644-chr10:97883865..97893202,24	K562	blood:
6	chr10:97798897..97807548-chr10:97886918..97893342,17	K562	blood:
7	chr10:97800624..97806520-chr10:97847575..97852414,10	K562	blood:
8	chr1:16533188..16534138-chr10:97802646..97803367,2	Hela-S3	cervix:
9	chr10:97802232..97804620-chr10:97847329..97851017,4	K562	blood:
10	chr10:97803257..97805604-chr10:97849531..97852092,3	MCF-7	breast:
11	chr10:97802278..97809202-chr10:97887978..97892462,12	MCF-7	breast:
12	chr10:97793928..97795682-chr10:97800634..97802290,2	K562	blood:
13	chr10:97804129..97806997-chr10:97883987..97886731,5	K562	blood:
14	chr10:97803583..97805560-chr10:98074679..98076235,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TCTN3-1	chr10:97802542-97802602	ENSG00000226688.1
2	lnc-TCTN3-1	chr10:97802235-97802684	ENSG00000226688.1

Variant related genes	Relation type
CCNJ	TF binding region
ENTPD1-AS1	TF binding region
CCNJ	CpG island
ENTPD1-AS1	CpG island
ENSG00000226688	chromatin interactions
ENSG00000177853	chromatin interactions
ENSG00000142632	chromatin interactions
ENSG00000173088	chromatin interactions

Extended variants
information (count: 101 )
Associated
traits (count: 67 )

Variant overlapped rSNPs/rCNVs (count:101 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs187985957	chr10:97802202-97802203	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
2	rs144680102	chr10:97802254-97802255	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
3	rs557263349	chr10:97802291-97802292	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
4	rs577111825	chr10:97802345-97802346	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
5	rs542341300	chr10:97802365-97802366	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
6	rs562030520	chr10:97802395-97802396	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
7	rs565082484	chr10:97802432-97802433	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
8	rs141346024	chr10:97802445-97802446	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
9	rs541888575	chr10:97802508-97802509	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
10	rs561383830	chr10:97802546-97802547	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
11	rs547764421	chr10:97802552-97802553	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
12	rs145204259	chr10:97802590-97802591	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
13	rs550084444	chr10:97802617-97802618	Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
14	rs11188570	chr10:97802640-97802641	Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
15	rs569968842	chr10:97802755-97802756	Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
16	rs532751050	chr10:97802768-97802769	Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
17	rs552541612	chr10:97802785-97802786	Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
18	rs397841357	chr10:97802794-97802795	Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
19	rs74719004	chr10:97802795-97802796	Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
20	rs181379024	chr10:97802818-97802819	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
21	rs534839618	chr10:97802952-97802953	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
22	rs555065135	chr10:97803006-97803007	Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
23	rs112550027	chr10:97803019-97803020	Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
24	rs115411882	chr10:97803112-97803113	Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
25	rs184732587	chr10:97803124-97803125	Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
26	rs557299977	chr10:97803177-97803178	Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
27	rs577248856	chr10:97803203-97803204	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
28	rs545515794	chr10:97803212-97803213	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
29	rs368534204	chr10:97803213-97803214	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
30	rs539720496	chr10:97803219-97803220	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
31	rs552921456	chr10:97803254-97803255	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
32	rs564779041	chr10:97803295-97803296	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
33	rs572980589	chr10:97803316-97803317	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
34	rs190391349	chr10:97803336-97803337	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
35	rs561419001	chr10:97803385-97803386	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
36	rs151011430	chr10:97803409-97803410	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
37	rs543765336	chr10:97803426-97803427	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
38	rs181669384	chr10:97803536-97803537	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
39	rs532722105	chr10:97803565-97803566	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
40	rs140862853	chr10:97803601-97803602	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
41	rs552818639	chr10:97803611-97803612	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
42	rs559711558	chr10:97803618-97803619	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
43	rs187579172	chr10:97803629-97803630	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
44	rs550417969	chr10:97803647-97803648	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
45	rs116872796	chr10:97803735-97803736	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
46	rs568523661	chr10:97803747-97803748	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
47	rs537530218	chr10:97803775-97803776	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
48	rs551043982	chr10:97803805-97803806	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
49	rs576975435	chr10:97803811-97803812	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
50	rs539388344	chr10:97803814-97803815	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:67)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Prostate cancer	16573809	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Lung cancer	16773561	CNVD
Colorectal cancer	16912164	CNVD
Melanoma	17363583	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:434 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97797800-97802600	Weak transcription	Small Intestine	intestine
2	chr10:97798800-97802400	Weak transcription	GM12878-XiMat	blood
3	chr10:97799000-97802800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:97799200-97802200	Weak transcription	K562	blood
5	chr10:97799400-97802400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:97799400-97802400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr10:97799400-97802400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:97799400-97802400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:97799400-97802400	Weak transcription	HUVEC	blood vessel
10	chr10:97799400-97802600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr10:97799800-97802800	Weak transcription	Esophagus	oesophagus
12	chr10:97801000-97802400	Weak transcription	Fetal Intestine Large	intestine
13	chr10:97801600-97802600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr10:97801600-97802800	Weak transcription	Placenta	Placenta
15	chr10:97802000-97802200	Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr10:97802000-97802200	Enhancers	Fetal Brain Male	brain
17	chr10:97802000-97802200	Enhancers	Fetal Brain Female	brain
18	chr10:97802000-97802200	Enhancers	Dnd41	blood
19	chr10:97802000-97802400	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr10:97802000-97802400	Weak transcription	NHEK	skin
21	chr10:97802000-97802600	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr10:97802000-97802600	Enhancers	Primary T cells fromperipheralblood	blood
23	chr10:97802000-97802600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr10:97802000-97802600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr10:97802000-97802600	Enhancers	Fetal Intestine Small	intestine
26	chr10:97802000-97802600	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr10:97802000-97802800	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr10:97802200-97802400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
29	chr10:97802200-97802400	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr10:97802200-97802400	Enhancers	Brain Hippocampus Middle	brain
31	chr10:97802200-97802400	Enhancers	Fetal Lung	lung
32	chr10:97802200-97802400	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr10:97802200-97802600	Flanking Active TSS	Fetal Brain Male	brain
34	chr10:97802200-97802600	Flanking Active TSS	Fetal Brain Female	brain
35	chr10:97802200-97802800	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr10:97802200-97802800	Enhancers	K562	blood
37	chr10:97802200-97803000	Flanking Active TSS	Dnd41	blood
38	chr10:97802400-97802600	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
39	chr10:97802400-97802600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr10:97802400-97802600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
41	chr10:97802400-97802600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr10:97802400-97802600	Enhancers	Primary B cells from cord blood	blood
43	chr10:97802400-97802600	Enhancers	Primary T cells from cord blood	blood
44	chr10:97802400-97802600	Enhancers	Primary hematopoietic stem cells	blood
45	chr10:97802400-97802600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
46	chr10:97802400-97802600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr10:97802400-97802600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr10:97802400-97802600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr10:97802400-97802600	Enhancers	Muscle Satellite Cultured Cells	--
50	chr10:97802400-97802600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links