Variant report

Variant	rs534839618
Chromosome Location	chr10:97802952-97802953
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:239)
CpG islands
(count:183)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:239 , 50 per page) page: 1 2 3 4 5

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr10:97802541-97803653	A549	lung:	n/a	n/a
2	MAX	chr10:97802658-97803782	HCT-116	colon:	n/a	chr10:97803523-97803532
3	NFYA	chr10:97802783-97803499	K562	blood:	n/a	n/a
4	POLR2A	chr10:97802810-97804161	HUVEC	blood vessel:	n/a	n/a
5	POLR2A	chr10:97802840-97804445	GM12892	blood:	n/a	n/a
6	TAF1	chr10:97802917-97803889	HepG2	liver:	n/a	n/a
7	BRCA1	chr10:97802910-97803454	GM12878	blood:	n/a	chr10:97803258-97803267
8	YY1	chr10:97802793-97804352	HepG2	liver:	n/a	chr10:97803186-97803195 chr10:97803214-97803228 chr10:97803528-97803539 chr10:97803189-97803198
9	POLR2A	chr10:97802823-97804594	H1-neurons	neurons:	n/a	n/a
10	TCF3	chr10:97802914-97803621	GM12878	blood:	n/a	n/a
11	NFYB	chr10:97802786-97803546	GM12878	blood:	n/a	n/a
12	POLR2A	chr10:97802870-97803531	HCT-116	colon:	n/a	n/a
13	POLR2A	chr10:97802946-97804285	K562	blood:	n/a	n/a
14	MYC	chr10:97802924-97803544	MCF10A-Er-Src	breast:	n/a	chr10:97803523-97803532
15	TAF7	chr10:97802883-97803581	H1-hESC	embryonic stem cell:	n/a	n/a
16	CTCF	chr10:97802900-97803050	GM12871	blood:	n/a	n/a
17	MAX	chr10:97802689-97803680	MCF-7	breast:	n/a	chr10:97803523-97803532
18	JUND	chr10:97802928-97803422	K562	blood:	n/a	n/a
19	TBP	chr10:97802942-97803510	HepG2	liver:	n/a	n/a
20	RUNX3	chr10:97802832-97803562	GM12878	blood:	n/a	n/a
21	BCLAF1	chr10:97802801-97804116	GM12878	blood:	n/a	chr10:97803177-97803190 chr10:97803183-97803192 chr10:97803496-97803509 chr10:97803188-97803197 chr10:97803497-97803510 chr10:97803189-97803202
22	POLR2A	chr10:97802865-97803281	H1-hESC	embryonic stem cell:	n/a	n/a
23	MAZ	chr10:97802912-97804109	GM12878	blood:	n/a	chr10:97803523-97803532
24	MAX	chr10:97802734-97803839	Hela-S3	cervix:	n/a	chr10:97803523-97803532
25	YY1	chr10:97802862-97803670	ECC-1	luminal epithelium:	n/a	chr10:97803186-97803195 chr10:97803214-97803228 chr10:97803528-97803539 chr10:97803189-97803198
26	POLR2A	chr10:97802912-97804197	GM12878	blood:	n/a	n/a
27	POLR2A	chr10:97802946-97804640	HUVEC	blood vessel:	n/a	n/a
28	POLR2A	chr10:97802839-97804295	HEK293	kidney:	n/a	n/a
29	RCOR1	chr10:97802820-97803464	Hela-S3	cervix:	n/a	n/a
30	KAP1	chr10:97802829-97803291	U2OS	brain:	n/a	n/a
31	REST	chr10:97802490-97804714	H1-neurons	neurons:	n/a	chr10:97803739-97803752 chr10:97802850-97802863 chr10:97803828-97803841
32	MAZ	chr10:97802941-97804972	IMR90	lung:	n/a	chr10:97803523-97803532
33	POLR2A	chr10:97802815-97803599	PANC-1	pancreas:	n/a	n/a
34	POLR2A	chr10:97802935-97803567	U87	brain:	n/a	n/a
35	SP1	chr10:97802797-97803481	GM12878	blood:	n/a	n/a
36	EP300	chr10:97802729-97804387	ECC-1	luminal epithelium:	n/a	chr10:97803191-97803207 chr10:97803203-97803219
37	POLR2A	chr10:97802766-97804381	ECC-1	luminal epithelium:	n/a	n/a
38	MYC	chr10:97802589-97804207	K562	blood:	n/a	chr10:97803523-97803532
39	POLR2A	chr10:97802895-97804333	GM18505	blood:	n/a	n/a
40	MAX	chr10:97802738-97803681	SK-N-SH	brain:	n/a	chr10:97803523-97803532
41	POLR2A	chr10:97802865-97804295	K562	blood:	n/a	n/a
42	POLR2A	chr10:97802852-97803591	SK-N-SH	brain:	n/a	n/a
43	POLR2A	chr10:97802864-97803547	GM12878	blood:	n/a	n/a
44	SP1	chr10:97802777-97803529	A549	lung:	n/a	n/a
45	HEY1	chr10:97802896-97803601	K562	blood:	n/a	chr10:97803179-97803194 chr10:97803185-97803200
46	POLR2A	chr10:97802771-97803703	SK-N-MC	brain:	n/a	n/a
47	MAX	chr10:97802584-97804339	A549	lung:	n/a	chr10:97803523-97803532
48	HCFC1	chr10:97802333-97804425	Hela-S3	cervix:	n/a	n/a
49	POLR2A	chr10:97802868-97804730	HepG2	liver:	n/a	n/a
50	CREB1	chr10:97802778-97803470	H1-hESC	embryonic stem cell:	n/a	n/a

(count:183 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:97802912-97802962	HPAEpiC	pulmonary alveolar:	n/a
2	chr10:97802941-97802991	NB4	blood:	n/a
3	chr10:97802928-97802978	RPTEC	kidney:	n/a
4	chr10:97802912-97802962	SK-N-SH	brain:	n/a
5	chr10:97802928-97802978	HNPCEpiC	eye:	n/a
6	chr10:97802928-97802978	PANC-1	pancreas:	n/a
7	chr10:97802928-97802978	CMK	blood:	n/a
8	chr10:97802941-97802991	PrEC	prostate:	n/a
9	chr10:97802928-97802978	HRE	kidney:	n/a
10	chr10:97802941-97802991	CMK	blood:	n/a
11	chr10:97802941-97802991	NHBE	bronchial:	n/a
12	chr10:97802928-97802978	NH-A	brain:	n/a
13	chr10:97802912-97802962	HUVEC	blood vessel:	n/a
14	chr10:97802928-97802978	ProgFib	skin:	n/a
15	chr10:97802928-97802978	BE2_C	brain:	n/a
16	chr10:97802912-97802962	AG09319	gingival:	n/a
17	chr10:97802912-97802962	NHBE	bronchial:	n/a
18	chr10:97802941-97802991	SK-N-SH	brain:	n/a
19	chr10:97802912-97802962	HRE	kidney:	n/a
20	chr10:97802928-97802978	U87	brain:	n/a
21	chr10:97802941-97802991	Caco-2	colon:	n/a
22	chr10:97802941-97802991	BJ	skin:	n/a
23	chr10:97802941-97802991	HCF	heart:	n/a
24	chr10:97802912-97802962	AG09309	skin:	n/a
25	chr10:97802912-97802962	H1-hESC	embryonic stem cell:	embryo
26	chr10:97802912-97802962	HCT-116	colon:	n/a
27	chr10:97802941-97802991	NHDF-neo	bronchial:	n/a
28	chr10:97802941-97802991	IMR90	lung:	fetal
29	chr10:97802928-97802978	H1-hESC	embryonic stem cell:	embryo
30	chr10:97802941-97802991	T-47D	breast:	n/a
31	chr10:97802912-97802962	ProgFib	skin:	n/a
32	chr10:97802928-97802978	LNCaP	prostate:	n/a
33	chr10:97802941-97802991	GM19239	blood:	n/a
34	chr10:97802941-97802991	GM06990	blood:	n/a
35	chr10:97802928-97802978	K562	blood:	n/a
36	chr10:97802912-97802962	Jurkat	blood:	n/a
37	chr10:97802941-97802991	SK-N-MC	brain:	n/a
38	chr10:97802941-97802991	RPTEC	kidney:	n/a
39	chr10:97802928-97802978	NHBE	bronchial:	n/a
40	chr10:97802941-97802991	SKMC	muscle:	n/a
41	chr10:97802941-97802991	HL-60	blood:	n/a
42	chr10:97802928-97802978	HEK293	kidney:	embryo
43	chr10:97802912-97802962	HCPEpiC	choroid plexus:	n/a
44	chr10:97802912-97802962	PFSK-1	brain:	n/a
45	chr10:97802912-97802962	IMR90	lung:	fetal
46	chr10:97802912-97802962	GM19239	blood:	n/a
47	chr10:97802928-97802978	HL-60	blood:	n/a
48	chr10:97802912-97802962	NHDF-neo	bronchial:	n/a
49	chr10:97802928-97802978	HIPEpiC	eye:	n/a
50	chr10:97802928-97802978	AG09309	skin:	n/a

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:97798897..97807548-chr10:97886918..97893342,17	K562	blood:
2	chr10:97665969..97667709-chr10:97802060..97805145,4	MCF-7	breast:
3	chr10:97798897..97809644-chr10:97883865..97893202,24	K562	blood:
4	chr10:97802278..97809202-chr10:97887978..97892462,12	MCF-7	breast:
5	chr1:16533188..16534138-chr10:97802646..97803367,2	Hela-S3	cervix:
6	chr10:97800624..97806520-chr10:97847575..97852414,10	K562	blood:
7	chr10:97802832..97806993-chr10:97887536..97891956,8	MCF-7	breast:
8	chr10:97802232..97804620-chr10:97847329..97851017,4	K562	blood:

No data

Variant related genes	Relation type
ENTPD1-AS1	TF binding region
CCNJ	TF binding region
CCNJ	CpG island
ENTPD1-AS1	CpG island
ENSG00000226688	Chromatin interaction
ENSG00000142632	Chromatin interaction
ENSG00000177853	Chromatin interaction
ENSG00000173088	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3372441	chr10:97802187-97804735	Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97802200-97803000	Flanking Active TSS	Dnd41	blood
2	chr10:97802400-97803000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
3	chr10:97802400-97803000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
4	chr10:97802400-97803000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
5	chr10:97802400-97803000	Flanking Active TSS	Fetal Lung	lung
6	chr10:97802400-97803000	Flanking Active TSS	GM12878-XiMat	blood
7	chr10:97802400-97803200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr10:97802400-97804200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:97802400-97804200	Active TSS	Brain Anterior Caudate	brain
10	chr10:97802400-97804400	Active TSS	Duodenum Smooth Muscle	Duodenum
11	chr10:97802600-97803000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:97802600-97803000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:97802600-97803000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
14	chr10:97802600-97803000	Flanking Active TSS	Primary T cells from cord blood	blood
15	chr10:97802600-97803000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
16	chr10:97802600-97803000	Active TSS	Primary hematopoietic stem cells	blood
17	chr10:97802600-97803000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
18	chr10:97802600-97803000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
19	chr10:97802600-97803000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
20	chr10:97802600-97803000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
21	chr10:97802600-97803000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
22	chr10:97802600-97803000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:97802600-97803000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr10:97802600-97803000	Flanking Active TSS	Brain Angular Gyrus	brain
25	chr10:97802600-97803000	Flanking Active TSS	Brain Germinal Matrix	brain
26	chr10:97802600-97803000	Flanking Active TSS	Colon Smooth Muscle	Colon
27	chr10:97802600-97803000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
28	chr10:97802600-97803000	Flanking Active TSS	Fetal Muscle Leg	muscle
29	chr10:97802600-97803000	Flanking Active TSS	Fetal Stomach	stomach
30	chr10:97802600-97803000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
31	chr10:97802600-97803000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
32	chr10:97802600-97803000	Flanking Active TSS	Rectal Smooth Muscle	rectum
33	chr10:97802600-97803000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
34	chr10:97802600-97803000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
35	chr10:97802600-97803000	Flanking Active TSS	Stomach Mucosa	stomach
36	chr10:97802600-97803000	Flanking Active TSS	Stomach Smooth Muscle	stomach
37	chr10:97802600-97803000	Flanking Active TSS	HSMMtube	muscle
38	chr10:97802600-97803000	Flanking Active TSS	NH-A	brain
39	chr10:97802600-97803000	Flanking Active TSS	NHEK	skin
40	chr10:97802600-97803000	Flanking Active TSS	Osteobl	bone
41	chr10:97802600-97803200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
42	chr10:97802600-97803200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
43	chr10:97802600-97803200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr10:97802600-97803200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr10:97802600-97803200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
46	chr10:97802600-97803200	Flanking Active TSS	Adipose Nuclei	Adipose
47	chr10:97802600-97803200	Active TSS	Colonic Mucosa	Colon
48	chr10:97802600-97803200	Flanking Active TSS	Thymus	Thymus
49	chr10:97802600-97803200	Flanking Active TSS	HepG2	liver
50	chr10:97802600-97803400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin

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