Variant report

Variant	rs547764421
Chromosome Location	chr10:97802552-97802553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr10:97802541-97803653	A549	lung:	n/a	n/a
2	REST	chr10:97802490-97804714	H1-neurons	neurons:	n/a	chr10:97803739-97803752 chr10:97802850-97802863 chr10:97803828-97803841
3	HCFC1	chr10:97802333-97804425	Hela-S3	cervix:	n/a	n/a
4	MTA3	chr10:97802472-97804759	GM12878	blood:	n/a	n/a
5	MAX	chr10:97802508-97804478	ECC-1	luminal epithelium:	n/a	chr10:97803523-97803532
6	POLR2A	chr10:97802528-97804861	H1-hESC	embryonic stem cell:	n/a	n/a
7	E2F6	chr10:97802510-97804066	A549	lung:	n/a	chr10:97803186-97803195 chr10:97803758-97803770
8	E2F6	chr10:97802468-97804293	H1-hESC	embryonic stem cell:	n/a	chr10:97803186-97803195 chr10:97803758-97803770

No.	Distal block	Cell Line	Cell type
1	chr10:97798897..97807548-chr10:97886918..97893342,17	K562	blood:
2	chr10:97665969..97667709-chr10:97802060..97805145,4	MCF-7	breast:
3	chr10:97798897..97809644-chr10:97883865..97893202,24	K562	blood:
4	chr10:97802278..97809202-chr10:97887978..97892462,12	MCF-7	breast:
5	chr10:97800624..97806520-chr10:97847575..97852414,10	K562	blood:
6	chr10:97802232..97804620-chr10:97847329..97851017,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TCTN3-1	chr10:97802542-97802602	ENSG00000226688.1
2	lnc-TCTN3-1	chr10:97802235-97802684	ENSG00000226688.1

Variant related genes	Relation type
CCNJ	TF binding region
ENSG00000177853	Chromatin interaction
ENSG00000173088	Chromatin interaction
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3372441	chr10:97802187-97804735	Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97797800-97802600	Weak transcription	Small Intestine	intestine
2	chr10:97799000-97802800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:97799400-97802600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr10:97799800-97802800	Weak transcription	Esophagus	oesophagus
5	chr10:97801600-97802600	Weak transcription	Duodenum Mucosa	Duodenum
6	chr10:97801600-97802800	Weak transcription	Placenta	Placenta
7	chr10:97802000-97802600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr10:97802000-97802600	Enhancers	Primary T cells fromperipheralblood	blood
9	chr10:97802000-97802600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:97802000-97802600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr10:97802000-97802600	Enhancers	Fetal Intestine Small	intestine
12	chr10:97802000-97802600	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr10:97802000-97802800	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr10:97802200-97802600	Flanking Active TSS	Fetal Brain Male	brain
15	chr10:97802200-97802600	Flanking Active TSS	Fetal Brain Female	brain
16	chr10:97802200-97802800	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr10:97802200-97802800	Enhancers	K562	blood
18	chr10:97802200-97803000	Flanking Active TSS	Dnd41	blood
19	chr10:97802400-97802600	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
20	chr10:97802400-97802600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:97802400-97802600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
22	chr10:97802400-97802600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:97802400-97802600	Enhancers	Primary B cells from cord blood	blood
24	chr10:97802400-97802600	Enhancers	Primary T cells from cord blood	blood
25	chr10:97802400-97802600	Enhancers	Primary hematopoietic stem cells	blood
26	chr10:97802400-97802600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr10:97802400-97802600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr10:97802400-97802600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr10:97802400-97802600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:97802400-97802600	Enhancers	Muscle Satellite Cultured Cells	--
31	chr10:97802400-97802600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr10:97802400-97802600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr10:97802400-97802600	Enhancers	Adipose Nuclei	Adipose
34	chr10:97802400-97802600	Enhancers	Brain Angular Gyrus	brain
35	chr10:97802400-97802600	Enhancers	Brain Germinal Matrix	brain
36	chr10:97802400-97802600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr10:97802400-97802600	Enhancers	Colon Smooth Muscle	Colon
38	chr10:97802400-97802600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr10:97802400-97802600	Enhancers	Fetal Muscle Leg	muscle
40	chr10:97802400-97802600	Enhancers	Fetal Stomach	stomach
41	chr10:97802400-97802600	Active TSS	Rectal Mucosa Donor 29	rectum
42	chr10:97802400-97802600	Enhancers	Rectal Mucosa Donor 31	rectum
43	chr10:97802400-97802600	Enhancers	Rectal Smooth Muscle	rectum
44	chr10:97802400-97802600	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr10:97802400-97802600	Enhancers	Stomach Mucosa	stomach
46	chr10:97802400-97802600	Enhancers	Stomach Smooth Muscle	stomach
47	chr10:97802400-97802600	Enhancers	Thymus	Thymus
48	chr10:97802400-97802600	Enhancers	HepG2	liver
49	chr10:97802400-97802600	Active TSS	HSMMtube	muscle
50	chr10:97802400-97802600	Enhancers	NH-A	brain

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