Variant report

Variant	rs557263349
Chromosome Location	chr10:97802291-97802292
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:97798897..97807548-chr10:97886918..97893342,17	K562	blood:
2	chr10:97665969..97667709-chr10:97802060..97805145,4	MCF-7	breast:
3	chr10:97798897..97809644-chr10:97883865..97893202,24	K562	blood:
4	chr10:97802278..97809202-chr10:97887978..97892462,12	MCF-7	breast:
5	chr10:97800624..97806520-chr10:97847575..97852414,10	K562	blood:
6	chr10:97802232..97804620-chr10:97847329..97851017,4	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TCTN3-1	chr10:97802235-97802684	ENSG00000226688.1

No data

Variant related genes	Relation type
ENSG00000177853	Chromatin interaction
ENSG00000173088	Chromatin interaction
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3372441	chr10:97802187-97804735	Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97797800-97802600	Weak transcription	Small Intestine	intestine
2	chr10:97798800-97802400	Weak transcription	GM12878-XiMat	blood
3	chr10:97799000-97802800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:97799400-97802400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:97799400-97802400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr10:97799400-97802400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:97799400-97802400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:97799400-97802400	Weak transcription	HUVEC	blood vessel
9	chr10:97799400-97802600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr10:97799800-97802800	Weak transcription	Esophagus	oesophagus
11	chr10:97801000-97802400	Weak transcription	Fetal Intestine Large	intestine
12	chr10:97801600-97802600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr10:97801600-97802800	Weak transcription	Placenta	Placenta
14	chr10:97802000-97802400	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr10:97802000-97802400	Weak transcription	NHEK	skin
16	chr10:97802000-97802600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr10:97802000-97802600	Enhancers	Primary T cells fromperipheralblood	blood
18	chr10:97802000-97802600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr10:97802000-97802600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr10:97802000-97802600	Enhancers	Fetal Intestine Small	intestine
21	chr10:97802000-97802600	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr10:97802000-97802800	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr10:97802200-97802400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
24	chr10:97802200-97802400	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr10:97802200-97802400	Enhancers	Brain Hippocampus Middle	brain
26	chr10:97802200-97802400	Enhancers	Fetal Lung	lung
27	chr10:97802200-97802400	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr10:97802200-97802600	Flanking Active TSS	Fetal Brain Male	brain
29	chr10:97802200-97802600	Flanking Active TSS	Fetal Brain Female	brain
30	chr10:97802200-97802800	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr10:97802200-97802800	Enhancers	K562	blood
32	chr10:97802200-97803000	Flanking Active TSS	Dnd41	blood

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