Variant report

Variant	rs11195426
Chromosome Location	chr10:112869730-112869731
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10437458	0.98[ASN][1000 genomes]
rs2032023	0.96[ASN][1000 genomes]
rs4918625	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv825566	chr10:112830014-112871333	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv1796336	chr10:112848721-112878724	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112864200-112871800	Weak transcription	Colonic Mucosa	Colon
2	chr10:112865200-112872000	Weak transcription	Fetal Intestine Small	intestine
3	chr10:112866400-112869800	Enhancers	Stomach Mucosa	stomach
4	chr10:112867200-112869800	Enhancers	Duodenum Mucosa	Duodenum
5	chr10:112868400-112872600	Weak transcription	Gastric	stomach
6	chr10:112868800-112869800	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr10:112869400-112869800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:112869600-112869800	Enhancers	Pancreas	Pancrea
9	chr10:112869600-112873600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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