Variant report

Variant	rs4918625
Chromosome Location	chr10:112867219-112867220
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10437458	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11195426	0.93[ASN][1000 genomes]
rs2032023	0.93[AFR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv825566	chr10:112830014-112871333	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv1796336	chr10:112848721-112878724	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4918625	SORCS1	cis	parietal	SCAN
rs4918625	HEATR6	trans	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112860200-112868200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:112864000-112868800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:112864200-112868400	Enhancers	Pancreas	Pancrea
4	chr10:112864200-112871800	Weak transcription	Colonic Mucosa	Colon
5	chr10:112865200-112872000	Weak transcription	Fetal Intestine Small	intestine
6	chr10:112866400-112869800	Enhancers	Stomach Mucosa	stomach
7	chr10:112866600-112867600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr10:112866800-112868400	Enhancers	Gastric	stomach
9	chr10:112867000-112867400	Enhancers	Small Intestine	intestine
10	chr10:112867000-112868200	Enhancers	Liver	Liver
11	chr10:112867200-112869800	Enhancers	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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