Variant report

Variant	rs11195437
Chromosome Location	chr10:112906078-112906079
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10885100	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11195435	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11195440	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1335705	0.84[ASN][1000 genomes]
rs17128451	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1889745	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4081298	0.82[ASN][1000 genomes]
rs7910277	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112898400-112907800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:112899800-112907800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:112903000-112907800	Weak transcription	Pancreas	Pancrea
4	chr10:112905200-112906800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:112905200-112907000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:112905400-112906400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr10:112905600-112906400	Enhancers	Primary hematopoietic stem cells	blood
8	chr10:112905800-112906200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:112905800-112906200	Enhancers	Duodenum Mucosa	Duodenum
10	chr10:112905800-112906400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr10:112905800-112906400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr10:112905800-112906400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr10:112905800-112906400	Enhancers	Brain Hippocampus Middle	brain
14	chr10:112905800-112906400	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr10:112905800-112906600	Enhancers	Primary T cells from cord blood	blood
16	chr10:112905800-112906600	Enhancers	Primary T cells fromperipheralblood	blood
17	chr10:112905800-112906600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr10:112905800-112906600	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr10:112905800-112906600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr10:112906000-112906200	Weak transcription	Spleen	Spleen
21	chr10:112906000-112906400	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr10:112906000-112906400	Enhancers	Brain Cingulate Gyrus	brain
23	chr10:112906000-112906600	Enhancers	Primary T helper cells fromperipheralblood	blood

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