Variant report

Variant	rs1889745
Chromosome Location	chr10:112907670-112907671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10885100	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11195435	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11195437	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11195440	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1335705	0.83[ASN][1000 genomes]
rs17128451	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4081298	0.81[ASN][1000 genomes]
rs7910277	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112898400-112907800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:112899800-112907800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:112903000-112907800	Weak transcription	Pancreas	Pancrea
4	chr10:112906600-112907800	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:112906800-112908400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:112907000-112908800	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr10:112907400-112908200	Enhancers	Psoas Muscle	Psoas
8	chr10:112907400-112908600	Enhancers	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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