Variant report

Variant	rs11196733
Chromosome Location	chr10:116173605-116173606
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116058474..116060652-chr10:116172090..116174186,2	MCF-7	breast:
2	chr10:116063461..116065488-chr10:116171625..116174495,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169129	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10787529	0.92[ASN][1000 genomes]
rs10885565	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11196731	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11196732	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11196735	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11196736	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11196737	0.90[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11196739	0.90[CEU][hapmap];0.95[GIH][hapmap]
rs11551242	0.86[CHB][hapmap];0.81[CHD][hapmap]
rs11817343	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12219876	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1570224	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17091846	0.90[CEU][hapmap]
rs3750820	0.90[CEU][hapmap];0.86[CHB][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap]
rs4752726	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs58281507	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs60115018	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6585278	0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7075375	0.81[CHD][hapmap]
rs7081297	0.81[CHD][hapmap]
rs7090380	0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs7091921	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7917233	0.81[CHD][hapmap]
rs7918207	0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116169600-116177600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:116173400-116186800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:116173600-116173800	Enhancers	NHEK	skin
4	chr10:116173600-116174000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:116173600-116175400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:116173600-116175400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:116173600-116175400	Weak transcription	Right Ventricle	heart
8	chr10:116173600-116177400	Weak transcription	HMEC	breast
9	chr10:116173600-116177600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr10:116173600-116178000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:116173600-116180400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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