Variant report

Variant	rs7075375
Chromosome Location	chr10:116183068-116183069
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116064774..116067732-chr10:116180534..116183375,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169129	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10736236	0.83[JPT][hapmap];0.86[AMR][1000 genomes]
rs10749162	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10749163	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10749164	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10787528	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10885560	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10885562	0.95[ASN][1000 genomes]
rs11196730	0.95[MEX][hapmap];0.85[TSI][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes]
rs11196731	0.81[CHD][hapmap]
rs11196733	0.81[CHD][hapmap]
rs11196734	0.87[ASN][1000 genomes]
rs12255595	1.00[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.90[MEX][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2065022	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4545457	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4751904	0.83[ASN][1000 genomes]
rs56752894	0.99[ASN][1000 genomes]
rs6585278	0.83[CHD][hapmap]
rs7081297	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.88[ASN][1000 genomes]
rs7088296	0.81[AMR][1000 genomes]
rs7916887	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7917233	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];1.00[ASN][1000 genomes]
rs7918207	0.83[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7075375	PTGIS	trans	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116173400-116186800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:116178400-116189200	Weak transcription	Primary T cells from cord blood	blood
3	chr10:116180000-116196200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:116180800-116190200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:116181000-116189400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr10:116181000-116190400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:116181400-116190600	Weak transcription	HMEC	breast

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