Variant report

Variant	rs11196750
Chromosome Location	chr10:116226151-116226152
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10885567	0.97[EUR][1000 genomes]
rs12573832	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs475150	0.81[CEU][hapmap]
rs605654	0.91[CEU][hapmap]
rs622646	0.91[CEU][hapmap]
rs6585283	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7069926	0.83[CEU][hapmap]
rs7910088	0.81[CEU][hapmap]
rs7916374	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116189200-116231000	Strong transcription	Primary T cells from cord blood	blood
2	chr10:116189800-116232200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:116192200-116230600	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr10:116192800-116231000	Strong transcription	Primary B cells from peripheral blood	blood
5	chr10:116193600-116230800	Weak transcription	GM12878-XiMat	blood
6	chr10:116194400-116251600	Weak transcription	Small Intestine	intestine
7	chr10:116199000-116231000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr10:116199200-116243400	Weak transcription	Brain Hippocampus Middle	brain
9	chr10:116199600-116244600	Weak transcription	A549	lung
10	chr10:116199800-116249200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:116200200-116230800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr10:116200200-116231000	Weak transcription	Brain Angular Gyrus	brain
13	chr10:116200800-116232400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr10:116201000-116229000	Weak transcription	HMEC	breast
15	chr10:116201000-116232400	Weak transcription	Colonic Mucosa	Colon
16	chr10:116201000-116242400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr10:116202200-116229000	Weak transcription	Fetal Heart	heart
18	chr10:116202200-116231600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr10:116204600-116232400	Weak transcription	Brain Anterior Caudate	brain
20	chr10:116205200-116228400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:116205600-116228200	Weak transcription	Spleen	Spleen
22	chr10:116206600-116232400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr10:116207000-116232800	Weak transcription	HUVEC	blood vessel
24	chr10:116209600-116232600	Weak transcription	Brain Substantia Nigra	brain
25	chr10:116211000-116232400	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr10:116211200-116232200	Weak transcription	Fetal Kidney	kidney
27	chr10:116211400-116231800	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr10:116212800-116229800	Strong transcription	Liver	Liver
29	chr10:116213000-116230800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr10:116214200-116230800	Weak transcription	Stomach Mucosa	stomach
31	chr10:116214600-116230800	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr10:116214600-116263600	Weak transcription	Rectal Smooth Muscle	rectum
33	chr10:116216600-116231600	Weak transcription	Psoas Muscle	Psoas
34	chr10:116217200-116230800	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr10:116217400-116229800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr10:116217600-116230600	Strong transcription	Primary B cells from cord blood	blood
37	chr10:116218200-116226600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr10:116218400-116249200	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr10:116218600-116230800	Strong transcription	HepG2	liver
40	chr10:116218800-116231000	Weak transcription	Brain Cingulate Gyrus	brain
41	chr10:116219000-116230800	Weak transcription	Pancreas	Pancrea
42	chr10:116219000-116232000	Strong transcription	Left Ventricle	heart
43	chr10:116219200-116226600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr10:116219800-116226400	Strong transcription	Adipose Nuclei	Adipose
45	chr10:116219800-116231000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr10:116220200-116226600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr10:116220200-116236600	Weak transcription	Colon Smooth Muscle	Colon
48	chr10:116221800-116226400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr10:116221800-116226400	Strong transcription	Sigmoid Colon	Sigmoid Colon
50	chr10:116221800-116227000	Strong transcription	Rectal Mucosa Donor 31	rectum

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