Variant report

Variant	rs7069926
Chromosome Location	chr10:116161080-116161081
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11196728	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11196738	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11196750	0.83[CEU][hapmap]
rs12354693	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12354943	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12355335	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12356147	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12357098	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12359269	0.91[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12573832	0.82[CEU][hapmap]
rs17406965	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41293058	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs475150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs605654	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61868314	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61868324	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs622320	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs622646	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6585277	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6585283	0.81[CEU][hapmap]
rs7899139	0.84[JPT][hapmap]
rs7900888	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7910088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7916374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7916796	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs941855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9665297	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116151800-116162600	Weak transcription	Lung	lung
2	chr10:116153200-116162600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:116154200-116161200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:116156800-116162200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:116157600-116161400	Enhancers	Ovary	ovary
6	chr10:116157800-116161800	Enhancers	HMEC	breast
7	chr10:116157800-116162600	Enhancers	Colon Smooth Muscle	Colon
8	chr10:116157800-116162600	Weak transcription	Esophagus	oesophagus
9	chr10:116158800-116162000	Enhancers	Fetal Muscle Leg	muscle
10	chr10:116158800-116162400	Enhancers	Fetal Stomach	stomach
11	chr10:116159000-116161200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
12	chr10:116159000-116161400	Enhancers	NHDF-Ad	bronchial
13	chr10:116159000-116162600	Weak transcription	Right Ventricle	heart
14	chr10:116159000-116163000	Enhancers	HSMMtube	muscle
15	chr10:116159200-116161200	Weak transcription	Spleen	Spleen
16	chr10:116159200-116162200	Enhancers	Rectal Smooth Muscle	rectum
17	chr10:116159400-116161200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:116159400-116162000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr10:116159600-116161200	Bivalent Enhancer	NHLF	lung
20	chr10:116159800-116162600	Weak transcription	Pancreas	Pancrea
21	chr10:116159800-116162600	Enhancers	A549	lung
22	chr10:116160000-116161200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:116160000-116161400	Enhancers	Brain Angular Gyrus	brain
24	chr10:116160000-116161400	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
25	chr10:116160200-116161600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:116160200-116162000	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr10:116160200-116162600	Weak transcription	Left Ventricle	heart
28	chr10:116160200-116162600	Enhancers	NH-A	brain
29	chr10:116160400-116161200	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr10:116160400-116162000	Weak transcription	Brain Anterior Caudate	brain
31	chr10:116160400-116162600	Weak transcription	GM12878-XiMat	blood
32	chr10:116160600-116161200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr10:116160600-116161800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
34	chr10:116160600-116162400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr10:116160800-116161400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr10:116160800-116161600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr10:116160800-116161600	Flanking Active TSS	Stomach Smooth Muscle	stomach
38	chr10:116161000-116161200	Enhancers	H9 Cell Line	embryonic stem cell
39	chr10:116161000-116161200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr10:116161000-116161200	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
41	chr10:116161000-116161200	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
42	chr10:116161000-116161200	Flanking Active TSS	Fetal Muscle Trunk	muscle
43	chr10:116161000-116161400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
44	chr10:116161000-116161400	Bivalent Enhancer	Psoas Muscle	Psoas
45	chr10:116161000-116161400	Enhancers	Right Atrium	heart
46	chr10:116161000-116161400	Enhancers	HSMM	muscle
47	chr10:116161000-116161600	Genic enhancers	NHEK	skin
48	chr10:116161000-116162000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr10:116161000-116162400	Enhancers	Fetal Kidney	kidney
50	chr10:116161000-116162600	Bivalent Enhancer	Fetal Lung	lung

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