Variant report

Variant	rs12355335
Chromosome Location	chr10:116166321-116166322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11196728	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11196738	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12354693	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12354943	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12356147	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12357098	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12359269	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17406965	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41293058	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs475150	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs605654	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61868314	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61868324	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs622320	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs622646	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6585277	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069926	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7900888	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7910088	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916374	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7916796	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs941855	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9665297	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116165000-116172000	Weak transcription	Esophagus	oesophagus
2	chr10:116165000-116172600	Weak transcription	Pancreas	Pancrea
3	chr10:116165200-116167600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:116165200-116167600	Weak transcription	Spleen	Spleen
5	chr10:116165400-116172200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:116165600-116166600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:116165600-116167600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:116165600-116167600	Weak transcription	A549	lung
9	chr10:116165600-116167600	Weak transcription	NHEK	skin
10	chr10:116165800-116167600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr10:116166000-116168800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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