Variant report

Variant	rs11196810
Chromosome Location	chr10:116383619-116383620
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116310031..116311847-chr10:116382346..116385171,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10444096	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10787539	0.92[JPT][hapmap]
rs10787540	0.92[JPT][hapmap]
rs11196798	0.92[JPT][hapmap]
rs11196802	1.00[ASW][hapmap];0.92[JPT][hapmap];1.00[MKK][hapmap]
rs11196804	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11196806	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11196813	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11196814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11196825	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11196826	1.00[ASW][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11196841	1.00[ASW][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11196844	0.92[JPT][hapmap]
rs11196845	1.00[CHD][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs11196853	0.81[CHD][hapmap];0.92[JPT][hapmap]
rs11196854	1.00[CHD][hapmap];0.92[JPT][hapmap];1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs11196856	0.81[ASN][1000 genomes]
rs11196858	0.81[ASN][1000 genomes]
rs11196861	0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs12146316	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12359503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12360417	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12763337	0.85[ASN][1000 genomes]
rs12768716	1.00[ASW][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12772864	0.85[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17719647	0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs34811081	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4237504	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4751620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4752039	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4752040	0.98[ASN][1000 genomes]
rs4752044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4752047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4752071	0.89[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4752089	0.92[JPT][hapmap]
rs7080854	0.92[JPT][hapmap]
rs7094673	0.92[JPT][hapmap]
rs955634	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116378200-116385000	Enhancers	Right Atrium	heart
2	chr10:116378800-116391200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:116380000-116384200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:116381200-116385000	Enhancers	Left Ventricle	heart
5	chr10:116381400-116385200	Enhancers	Stomach Mucosa	stomach
6	chr10:116382000-116384000	Weak transcription	Pancreas	Pancrea
7	chr10:116382000-116384400	Enhancers	Gastric	stomach
8	chr10:116382000-116385000	Weak transcription	Right Ventricle	heart
9	chr10:116382000-116385600	Enhancers	HepG2	liver
10	chr10:116382200-116384000	Enhancers	Adipose Nuclei	Adipose
11	chr10:116382200-116384200	Weak transcription	Esophagus	oesophagus
12	chr10:116382200-116384400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr10:116382200-116384400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr10:116382200-116384400	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr10:116382200-116385000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr10:116382400-116383800	Enhancers	Duodenum Mucosa	Duodenum
17	chr10:116382400-116384000	Enhancers	Fetal Intestine Small	intestine
18	chr10:116382400-116384200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:116382400-116384200	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr10:116382400-116384200	Enhancers	Colon Smooth Muscle	Colon
21	chr10:116382400-116384400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr10:116382400-116384400	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr10:116382400-116384400	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr10:116382400-116384400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:116382400-116384400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:116382400-116384400	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr10:116382400-116384400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr10:116382400-116384400	Enhancers	Stomach Smooth Muscle	stomach
29	chr10:116382400-116384600	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr10:116382400-116385400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr10:116382400-116385600	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr10:116382400-116387400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr10:116382400-116387600	Enhancers	HMEC	breast
34	chr10:116382400-116387800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr10:116382400-116388000	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr10:116382600-116383800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr10:116382600-116384200	Enhancers	Rectal Mucosa Donor 29	rectum
38	chr10:116382600-116384400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr10:116382600-116384400	Enhancers	Liver	Liver
40	chr10:116382600-116384400	Enhancers	Pancreatic Islets	Pancreatic Islet
41	chr10:116382600-116385000	Enhancers	HUVEC	blood vessel
42	chr10:116382600-116385200	Enhancers	Muscle Satellite Cultured Cells	--
43	chr10:116382600-116385400	Enhancers	HSMMtube	muscle
44	chr10:116382600-116387200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr10:116382600-116387600	Enhancers	NHEK	skin
46	chr10:116382800-116384200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
47	chr10:116382800-116384200	Enhancers	Fetal Muscle Leg	muscle
48	chr10:116382800-116384400	Enhancers	H1 Cell Line	embryonic stem cell
49	chr10:116382800-116384400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr10:116382800-116385200	Enhancers	Osteobl	bone

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