Variant report

Variant	rs34811081
Chromosome Location	chr10:116395387-116395388
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116393656..116396167-chr10:116399745..116401375,2	K562	blood:
2	chr10:116381677..116383578-chr10:116393467..116395747,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10444096	0.81[ASN][1000 genomes]
rs11196804	0.87[EUR][1000 genomes]
rs11196806	0.81[ASN][1000 genomes]
rs11196810	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11196813	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11196814	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11196825	0.89[ASN][1000 genomes]
rs11196826	0.89[ASN][1000 genomes]
rs11196841	0.85[ASN][1000 genomes]
rs11196845	0.81[ASN][1000 genomes]
rs11196854	0.81[ASN][1000 genomes]
rs11196856	0.81[ASN][1000 genomes]
rs11196858	0.81[ASN][1000 genomes]
rs11196861	0.81[ASN][1000 genomes]
rs12146316	0.89[ASN][1000 genomes]
rs12359503	0.87[EUR][1000 genomes]
rs12360417	0.88[EUR][1000 genomes]
rs12763337	0.85[ASN][1000 genomes]
rs12768716	0.81[ASN][1000 genomes]
rs12772864	0.89[ASN][1000 genomes]
rs17719647	0.85[ASN][1000 genomes]
rs4237504	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4751620	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4752044	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4752047	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4752071	0.87[ASN][1000 genomes]
rs955634	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116391400-116395800	Weak transcription	Spleen	Spleen
2	chr10:116392200-116395400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:116392200-116395400	Enhancers	HMEC	breast
4	chr10:116392200-116395400	Enhancers	NHEK	skin
5	chr10:116392200-116395800	Enhancers	Placenta	Placenta
6	chr10:116392400-116395400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:116392400-116395400	Enhancers	Fetal Lung	lung
8	chr10:116392400-116395600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr10:116392400-116396400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr10:116392800-116395800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:116392800-116396000	Enhancers	Adipose Nuclei	Adipose
12	chr10:116392800-116396200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:116392800-116396200	Enhancers	Fetal Muscle Leg	muscle
14	chr10:116392800-116399000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:116393000-116395800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:116393000-116396200	Enhancers	Liver	Liver
17	chr10:116393200-116395400	Enhancers	Brain Anterior Caudate	brain
18	chr10:116393400-116395400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:116393400-116396200	Enhancers	Brain Cingulate Gyrus	brain
20	chr10:116393600-116395400	Enhancers	K562	blood
21	chr10:116393600-116395800	Enhancers	NHDF-Ad	bronchial
22	chr10:116393600-116396000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr10:116393600-116396000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr10:116393600-116398200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr10:116393600-116405800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr10:116393800-116395400	Enhancers	NHLF	lung
27	chr10:116393800-116396000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr10:116393800-116397200	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr10:116394400-116395400	Flanking Active TSS	Fetal Heart	heart
30	chr10:116394400-116422600	Weak transcription	Fetal Intestine Small	intestine
31	chr10:116394600-116395400	Flanking Active TSS	HSMMtube	muscle
32	chr10:116394800-116395400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr10:116394800-116395400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr10:116394800-116395400	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
35	chr10:116394800-116395400	Flanking Active TSS	Hela-S3	cervix
36	chr10:116394800-116395800	Enhancers	Brain Hippocampus Middle	brain
37	chr10:116394800-116396200	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr10:116394800-116396200	Enhancers	Stomach Mucosa	stomach
39	chr10:116394800-116396600	Enhancers	Brain Substantia Nigra	brain
40	chr10:116394800-116396800	Enhancers	Right Atrium	heart
41	chr10:116395000-116395400	Enhancers	Colonic Mucosa	Colon
42	chr10:116395000-116395800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr10:116395000-116396000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr10:116395000-116396000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr10:116395000-116396000	Enhancers	Ovary	ovary
46	chr10:116395000-116396200	Enhancers	Esophagus	oesophagus
47	chr10:116395000-116396200	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr10:116395000-116396400	Enhancers	Right Ventricle	heart
49	chr10:116395000-116396600	Enhancers	Pancreas	Pancrea
50	chr10:116395000-116397000	Enhancers	Left Ventricle	heart

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