Variant report

Variant	rs11197079
Chromosome Location	chr10:116898709-116898710
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11197099	0.86[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11197137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11197153	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs11528271	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs12217550	0.90[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv831998	chr10:116847998-116969618	Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv869279	chr10:116884639-117032437	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116893800-116899400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr10:116895600-116909200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:116897200-116905200	Weak transcription	Fetal Brain Female	brain
4	chr10:116897400-116905000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:116898200-116898800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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