Variant report

Variant	rs11197099
Chromosome Location	chr10:116933296-116933297
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11197079	0.86[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11197137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11197153	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs11197183	0.86[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs11528271	0.86[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs12217550	0.86[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv831998	chr10:116847998-116969618	Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv869279	chr10:116884639-117032437	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116923800-116935600	Weak transcription	Fetal Brain Male	brain
2	chr10:116924400-116936000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:116926600-116933400	Weak transcription	Fetal Brain Female	brain
4	chr10:116926600-116951400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:116931600-116933600	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr10:116932400-116940400	Weak transcription	Aorta	Aorta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links