Variant report

Variant	rs11197143
Chromosome Location	chr10:117032183-117032184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12244489	1.00[AMR][1000 genomes]
rs12248684	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12249092	1.00[AMR][1000 genomes]
rs12251806	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869279	chr10:116884639-117032437	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv868940	chr10:116933802-117032437	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116997200-117049800	Weak transcription	Ovary	ovary
2	chr10:117011400-117034400	Weak transcription	Aorta	Aorta
3	chr10:117019000-117034400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:117019000-117034600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr10:117029000-117033400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:117031800-117032200	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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