Variant report
| Variant | rs11197623 |
|---|---|
| Chromosome Location | chr10:118046028-118046029 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:118041442..118043123-chr10:118044794..118046648,2 | K562 | blood: | |
| 2 | chr10:118035598..118037239-chr10:118045691..118047252,2 | MCF-7 | breast: | |
| 3 | chr10:118030488..118032578-chr10:118042557..118047503,4 | MCF-7 | breast: | |
| 4 | chr10:118029653..118031249-chr10:118045197..118046929,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000151892 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs12767703 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1582298 | 0.88[EUR][1000 genomes] |
| rs1819810 | 0.88[EUR][1000 genomes] |
| rs1860401 | 0.88[EUR][1000 genomes] |
| rs1897522 | 0.88[EUR][1000 genomes] |
| rs2429477 | 0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2429478 | 0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2532671 | 0.82[EUR][1000 genomes] |
| rs2532674 | 0.88[EUR][1000 genomes] |
| rs2532675 | 0.88[EUR][1000 genomes] |
| rs2568923 | 0.84[EUR][1000 genomes] |
| rs2577344 | 0.88[EUR][1000 genomes] |
| rs2577348 | 0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2577349 | 0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4990300 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs67566312 | 0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs748297 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs758575 | 0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs881786 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs985383 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs988977 | 0.89[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3449389 | chr10:117806874-118102404 | Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv832000 | chr10:117944492-118116253 | Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
