Variant report

No.	Distal block	Cell Line	Cell type
1	chr10:118035598..118037239-chr10:118045691..118047252,2	MCF-7	breast:
2	chr10:118041451..118043258-chr10:118046041..118048376,2	MCF-7	breast:
3	chr10:118030488..118032578-chr10:118042557..118047503,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151892	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11197623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12767703	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1582298	0.88[EUR][1000 genomes]
rs1819810	0.88[EUR][1000 genomes]
rs1860401	0.88[EUR][1000 genomes]
rs1897522	0.88[EUR][1000 genomes]
rs2429477	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2429478	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2532671	0.82[EUR][1000 genomes]
rs2532674	0.88[EUR][1000 genomes]
rs2532675	0.88[EUR][1000 genomes]
rs2568923	0.84[EUR][1000 genomes]
rs2577344	0.88[EUR][1000 genomes]
rs2577348	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2577349	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4990300	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67566312	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs758575	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs881786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs985383	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs988977	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118046800-118047000	Bivalent Enhancer	Primary T cells from cord blood	blood

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