Variant report

Variant	rs11197662
Chromosome Location	chr10:118157176-118157177
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10885924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197680	1.00[AMR][1000 genomes]
rs60915080	1.00[AMR][1000 genomes]
rs7088209	1.00[AMR][1000 genomes]
rs7913137	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046807	chr10:118105880-118162086	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv832001	chr10:118138370-118315059	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118153400-118157600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:118154600-118157400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:118155600-118157400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:118155600-118160400	Weak transcription	HMEC	breast
5	chr10:118155800-118157600	Weak transcription	NHEK	skin
6	chr10:118157000-118158400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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